Gene
| Gene Model ID | pfu_aug2.0_842.1_07941 |
|---|---|
| Locus | scaffold842.1 : 77366 ... 82093 : + |
| To GenomeBrowser | scaffold842.1:77366..82093 |
| Genes list of scaffold | scaffold842.1 |
| Synonym | pfu_aug1.0_83971.1_06014 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_842.1_07941.t1 | 1 | 1 | Lectin_C | 56 | 161 | 1.7e-20 | 73.5 | 6.1e-24 | 3.0e-20 | 72.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_842.1_07941.t1 | gi|542203211|ref|XP_005475457.1| | PREDICTED: C-type lectin domain family 4 member F-like [Oreochromis niloticus] | 2.0e-20 |
| pfu_aug2.0_842.1_07941.t1 | gi|499052094|ref|XP_004576538.1| | PREDICTED: C-type lectin domain family 17, member A-like, partial [Maylandia zebra] | 1.0e-19 |
| pfu_aug2.0_842.1_07941.t1 | gi|696993007|ref|XP_009563574.1| | PREDICTED: asialoglycoprotein receptor 1-like [Cuculus canorus] | 3.0e-19 |
| pfu_aug2.0_842.1_07941.t1 | gi|736252262|ref|XP_010788427.1| | PREDICTED: CD209 antigen-like isoform X2 [Notothenia coriiceps] | 4.0e-19 |
Transcript
| Transcript ID | pfu_aug2.0_842.1_07941.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07941.t1 atgttctttggatttcattcaaacgaaaggaaatgttctttgtatgaatcatcaatttacaattcgaatggtgcagaaaa tggatggagattctacagaatgaaaggttgcccctatggatggactcattatatgaattcatgctactttatcaatgata aggacatgaaaagctgggaaatagcaaagatgacgtgtgaacagtatgatgcagcattggttgaaattcacgatcaagaa gaacaaaacttcatcgcctccatttgtcaactatctgatggattttggataggtggaacagacgcagctacggaggggga gtggagatggggtcgttcaggggagaaaataacatttgaagcttggttacaagatgagccaaacagtagtggaaacgagg actgcataatgatccatggaaacagaaactatgaatggatagacctgaattgtgacgcactaagaaatttcatctgcgaa aggaagtatatataa |
|
Protein
| Protein ID | pfu_aug2.0_842.1_07941.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07941.t1 MFFGFHSNERKCSLYESSIYNSNGAENGWRFYRMKGCPYGWTHYMNSCYFINDKDMKSWEIAKMTCEQYDAALVEIHDQE EQNFIASICQLSDGFWIGGTDAATEGEWRWGRSGEKITFEAWLQDEPNSSGNEDCIMIHGNRNYEWIDLNCDALRNFICE RKYI |
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