Gene
| Gene Model ID | pfu_aug2.0_842.1_07943 |
|---|---|
| Locus | scaffold842.1 : 129606 ... 141974 : + |
| To GenomeBrowser | scaffold842.1:129606..141974 |
| Genes list of scaffold | scaffold842.1 |
| Synonym | pfu_aug1.0_5836.1_45304 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| udp-glucose 4-epimerase isoform x1 | GO:0003978 GO:0006012 GO:0050662 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | RmlD_sub_bind | 5 | 165 | 6.4e-12 | 44.9 | 8.5e-15 | 1.0e-11 | 44.2 |
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | Epimerase | 6 | 265 | 0.0 | 179.7 | 0.0 | 0.0 | 179.4 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 1 | Polysacc_synt_2 | 6 | 127 | 1.8e-13 | 50.0 | 3.6e-15 | 4.4e-12 | 45.5 |
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | NAD_binding_10 | 6 | 195 | 7.7e-11 | 42.3 | 9.2e-14 | 1.1e-10 | 41.7 |
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | adh_short | 6 | 129 | 5.4e-10 | 39.4 | 7.0e-13 | 8.6e-10 | 38.7 |
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | KR | 6 | 133 | 9.1e-09 | 35.2 | 1.3e-11 | 1.6e-08 | 34.4 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 1 | NmrA | 6 | 127 | 1.2e-06 | 27.9 | 6.8e-09 | 8.4e-06 | 25.1 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 1 | 3Beta_HSD | 7 | 163 | 3.2e-16 | 58.8 | 4.8e-19 | 6.0e-16 | 57.9 |
| pfu_aug2.0_842.1_07943.t1 | 1 | 1 | NAD_binding_4 | 63 | 169 | 8.1e-10 | 38.0 | 1.3e-10 | 1.6e-07 | 30.4 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 2 | Polysacc_synt_2 | 149 | 186 | 1.8e-13 | 50.0 | 0.049 | 61.0 | 2.3 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 2 | 3Beta_HSD | 230 | 255 | 3.2e-16 | 58.8 | 2.8 | 3400.0 | -3.6 |
| pfu_aug2.0_842.1_07943.t1 | 2 | 2 | NmrA | 267 | 288 | 1.2e-06 | 27.9 | 0.27 | 340.0 | 0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_842.1_07943.t1 | gi|674078672|ref|XP_008846821.1| | PREDICTED: UDP-glucose 4-epimerase isoform X1 [Nannospalax galili] | 0.0 |
| pfu_aug2.0_842.1_07943.t1 | gi|512876197|ref|XP_004893883.1| | 0.0 | |
| pfu_aug2.0_842.1_07943.t1 | gi|512876201|ref|XP_004893884.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_842.1_07943.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07943.t1 atgaatgcagaaaggatacttgtgaccggcggagcgggatatgttggcagtcatactgtcgtagaactcgtcaaggcagg atactctgttgtcattctggataatttgtcaaattcaagttcagaaagcattaaaagagttgaagaaatcacgggggtga cagtacctacattcaaggttgatctgctgaatagaccggagatggaggaattgttttctaagtacaaattcaacagtgtg attcactttgctggactgaaagcggtaggggagtcctgtagtgacccaatagcctactaccaaacgaatgttagtggaac cataaatttattagaggtgatgaaggcttacggtgtgaagaatttactgttctccagttcatgtactgtctatggcaagt cccagtacttacctttggatgagaaacatccactgggggcttgtacaaacccatacggtagatcaaaatacttcattgaa gaaattctcaaagatcttacaaaatcagaaccgggatggaatattatttgtctccgttacttcaatccaattggagctca tgagtcgggtagaattggagaagacccaaccggagtaccacataaccttgtgccattcattacccaagtggcagtgggta gaagacgggagcttaatgtatatggctttgattatgatacacctgatgggacatgtataagggactacatacacgttgta gacttagccaaaggccacttggccgcgcaacgaaaaacacaaacaaattgtggcttcaaggcatacaatctaggcacggg aaagggttattctgtattagaaatagtgcaaacatttgagagaatatctggacaatctgtacagatcactggcgatggca atccaagaatccagatggttacagatgctgtagcacaaccagcgggctcgataataagtgttaaatag |
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Protein
| Protein ID | pfu_aug2.0_842.1_07943.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07943.t1 MNAERILVTGGAGYVGSHTVVELVKAGYSVVILDNLSNSSSESIKRVEEITGVTVPTFKVDLLNRPEMEELFSKYKFNSV IHFAGLKAVGESCSDPIAYYQTNVSGTINLLEVMKAYGVKNLLFSSSCTVYGKSQYLPLDEKHPLGACTNPYGRSKYFIE EILKDLTKSEPGWNIICLRYFNPIGAHESGRIGEDPTGVPHNLVPFITQVAVGRRRELNVYGFDYDTPDGTCIRDYIHVV DLAKGHLAAQRKTQTNCGFKAYNLGTGKGYSVLEIVQTFERISGQSVQITGDGNPRIQMVTDAVAQPAGSIISVK |
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