Gene
| Gene Model ID | pfu_aug2.0_842.1_07944 |
|---|---|
| Locus | scaffold842.1 : 144713 ... 164235 : - |
| To GenomeBrowser | scaffold842.1:144713..164235 |
| Genes list of scaffold | scaffold842.1 |
| Synonym | pfu_aug1.0_5836.1_45305 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_842.1_07944.t1 | 3 | 1 | I-set | 30 | 126 | 7.5e-21 | 73.7 | 5.9e-06 | 0.017 | 14.9 |
| pfu_aug2.0_842.1_07944.t1 | 4 | 1 | V-set | 31 | 128 | 2.4e-07 | 30.6 | 2.2e-07 | 0.00065 | 19.5 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 1 | Ig_2 | 35 | 129 | 3.6e-19 | 68.6 | 2.2e-06 | 0.0066 | 16.5 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 1 | Ig_3 | 38 | 125 | 1.9e-15 | 57.0 | 0.0027 | 8.0 | 7.0 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 1 | ig | 40 | 125 | 3.0e-12 | 46.4 | 2.4e-05 | 0.072 | 13.2 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 2 | Ig_3 | 153 | 221 | 1.9e-15 | 57.0 | 3.1e-10 | 9.2e-07 | 29.2 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 2 | I-set | 157 | 224 | 7.5e-21 | 73.7 | 1.9e-09 | 5.8e-06 | 26.0 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 2 | Ig_2 | 158 | 223 | 3.6e-19 | 68.6 | 2.0e-09 | 6.0e-06 | 26.3 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 2 | ig | 163 | 219 | 3.0e-12 | 46.4 | 4.1e-08 | 0.00012 | 22.1 |
| pfu_aug2.0_842.1_07944.t1 | 4 | 2 | V-set | 201 | 222 | 2.4e-07 | 30.6 | 0.14 | 430.0 | 0.8 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 3 | I-set | 257 | 340 | 7.5e-21 | 73.7 | 4.6e-10 | 1.4e-06 | 28.0 |
| pfu_aug2.0_842.1_07944.t1 | 4 | 3 | V-set | 257 | 327 | 2.4e-07 | 30.6 | 0.00074 | 2.2 | 8.2 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 3 | Ig_2 | 258 | 336 | 3.6e-19 | 68.6 | 6.3e-08 | 0.00019 | 21.5 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 3 | Ig_3 | 258 | 329 | 1.9e-15 | 57.0 | 1.6e-05 | 0.048 | 14.1 |
| pfu_aug2.0_842.1_07944.t1 | 3 | 3 | ig | 299 | 325 | 3.0e-12 | 46.4 | 0.014 | 43.0 | 4.3 |
| pfu_aug2.0_842.1_07944.t1 | 4 | 4 | V-set | 379 | 408 | 2.4e-07 | 30.6 | 1.8 | 5300.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_842.1_07944.t1 | gi|676460322|ref|XP_009055585.1| | hypothetical protein LOTGIDRAFT_228659 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_842.1_07944.t1 | gi|524889609|ref|XP_005101359.1| | PREDICTED: lachesin-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_842.1_07944.t1 | gi|675850836|ref|XP_009010978.1| | hypothetical protein HELRODRAFT_109066 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_842.1_07944.t1 | gi|684401320|ref|XP_009173115.1| | hypothetical protein T265_14701 [Opisthorchis viverrini] | 2.0e-40 |
| pfu_aug2.0_842.1_07944.t1 | gi|759068131|ref|XP_011343561.1| | PREDICTED: lachesin isoform X1 [Cerapachys biroi] | 7.0e-29 |
Transcript
| Transcript ID | pfu_aug2.0_842.1_07944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07944.t1 atgtttcgagtcacttgtgtagttttaatttgcatccaggctttcgtttcaagtcaacggccagaaatagtagacgagat attgccggaggtaaagcagaaaaatcaagtggcttacctgaactgtactgttatcaataaggacgttggtacagtggtta catggcaaaaagccaaaacaaatatatctgcacagttcgtcatctcagaagatgaaagtattagtgttccaggtaacgat gaatctggaaataacgataattccggtttgctgaagtatgcgatagttacacggataaatggacgcaggaccacttatat gttagtcattcgttatttggtggaggaggacgcaggggcatatgtatgcgttgttagactgcagtcaatcccctataatg agtggccgactaaagtcggacttttaacggtacaaattgcacctaagatacaaaccattggagattctgtgtatgagttg gatcaaggaatgagcctgaatctgagttgtaatgcgtacgggattccaaatccaaatattacgtggaagagagaggacgg aaaccaacttcctggtggaggcttccaatcaaggggttccatccttcaactgttagatttaggcttcgaagatcgaggga atttcatttgtgtagcagataatcaagtgaaaccacctgacaactttaaagttgaagtactcatatttttccgaccagat tgtcgtcccgttcaggacactgtcggacaggcacaaaatcgacgttttaacgccaaactggaatgtattatagcaggtta tccgcagccgagcatgcgatgggagattcaaaccaatcagggatggaagaacataatagacgatgacaagtacaacatca acaagcaattcagcagtcagttacagagtgatgagacttggtacaccttactcgttaagaacgttctcgctaacgactac acgaggtacaggtgtattggtgataatagatatggaagcgcttatacagagattgttttatttgaaacaatggaatgcca gggaccaaactgtcctaccattggatcaggagcatcgagcatagttgtgccaatttcaacgtttctgttcaccctcgttg ccttcagattatttatcaggtcataaatcacaacaaaagaaaatgaatatttttgtaagaattttcgattttatgttgtt atgaagcatcaggttgtgaagttaacttttgtagcaagatgctcctaa |
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Protein
| Protein ID | pfu_aug2.0_842.1_07944.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07944.t1 MFRVTCVVLICIQAFVSSQRPEIVDEILPEVKQKNQVAYLNCTVINKDVGTVVTWQKAKTNISAQFVISEDESISVPGND ESGNNDNSGLLKYAIVTRINGRRTTYMLVIRYLVEEDAGAYVCVVRLQSIPYNEWPTKVGLLTVQIAPKIQTIGDSVYEL DQGMSLNLSCNAYGIPNPNITWKREDGNQLPGGGFQSRGSILQLLDLGFEDRGNFICVADNQVKPPDNFKVEVLIFFRPD CRPVQDTVGQAQNRRFNAKLECIIAGYPQPSMRWEIQTNQGWKNIIDDDKYNINKQFSSQLQSDETWYTLLVKNVLANDY TRYRCIGDNRYGSAYTEIVLFETMECQGPNCPTIGSGASSIVVPISTFLFTLVAFRLFIRSXITTKENEYFCKNFRFYVV MKHQVVKLTFVARCS |
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