Gene
| Gene Model ID | pfu_aug2.0_842.1_07948 |
|---|---|
| Locus | scaffold842.1 : 213650 ... 228766 : + |
| To GenomeBrowser | scaffold842.1:213650..228766 |
| Genes list of scaffold | scaffold842.1 |
| Synonym | pfu_aug1.0_31255.1_12051 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_842.1_07948.t1 | 1 | 1 | SID-1_RNA_chan | 112 | 368 | 2.9e-29 | 101.7 | 3.4e-33 | 5.1e-29 | 100.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_842.1_07948.t1 | gi|637352907|ref|XP_008118682.1| | PREDICTED: SID1 transmembrane family member 1 isoform X3 [Anolis carolinensis] | 3.0e-34 |
| pfu_aug2.0_842.1_07948.t1 | gi|507653435|ref|XP_004633362.1| | PREDICTED: SID1 transmembrane family member 1 isoform X2 [Octodon degus] | 1.0e-30 |
| pfu_aug2.0_842.1_07948.t1 | gi|507653431|ref|XP_004633361.1| | PREDICTED: SID1 transmembrane family member 1 isoform X1 [Octodon degus] | 1.0e-30 |
| pfu_aug2.0_842.1_07948.t1 | gi|672071112|ref|XP_008766940.1| | PREDICTED: SID1 transmembrane family member 1 isoform X2 [Rattus norvegicus] | 3.0e-30 |
| pfu_aug2.0_842.1_07948.t1 | gi|505795644|ref|XP_004606845.1| | PREDICTED: SID1 transmembrane family member 1, partial [Sorex araneus] | 4.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_842.1_07948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07948.t1 atgccaggccttttaatttttctatcacttttcatactgacaagagcagcaatcgatgattttaacatcaaatcaaccta ttcagcacgtaaatctctactttcgctttcaagatatgacaggttatttcaacaggaatcggctgttttccatgcagacc tcggaaaaacatacactgcagctgtaaattcatctgtcgaaataatatttgaaattagttacaaagaagttattaatcag actacagctctgcgtattcgtaccgagttgtcgtctggctttgattcattagagcactatcctctattagtggttgtacg acaacaggaggctatacaatcatggaaactcccaatgcctgtggaagatgtagtttgtatttctgcagaatacttcttta catttcagtgtccggtatatgaccagcacagagacgtcaagttccagggaaagtaccagaccatgtccaaacaagctgcc attactgtcgtgaaagaggactacaaagagaaatcattttacatagtatttgtactgaaacccagtgatttagactgcca tggaattgagaaaatccatccagccggttttcagagagtcaaacgtttgaatgtaacagtgactggcaccataagcgcta ctagttactacttagccattttagctgcagttttcttctttgtccttttctatgcctctgctgtgttcatcggaatattt tatcatggatgtacaaagaacagaggaatttggatgcagataccgcagtcatctgaagatgactcgtcttccaccttaat ctcaccaaacagtacacccacttcctatggtactgtgtcaaactcagattcagttcgtcggaataaggagcttggtgccg taccccgtcactctgtacttcctaaagtcacgacggatgatgattcgtctattgactctgatgaaatagatttcctacta gatgctgatagtgataaagaagttatcagaactaagacagtggtttgcgtgtctgacctgtccaggaaaaaatacaaacg agaacacaaaaaatacactttgtattggagtacaaagaacagaggaatttggatgcagataccacagtcatctgaag |
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Protein
| Protein ID | pfu_aug2.0_842.1_07948.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_842.1_07948.t1 MPGLLIFLSLFILTRAAIDDFNIKSTYSARKSLLSLSRYDRLFQQESAVFHADLGKTYTAAVNSSVEIIFEISYKEVINQ TTALRIRTELSSGFDSLEHYPLLVVVRQQEAIQSWKLPMPVEDVVCISAEYFFTFQCPVYDQHRDVKFQGKYQTMSKQAA ITVVKEDYKEKSFYIVFVLKPSDLDCHGIEKIHPAGFQRVKRLNVTVTGTISATSYYLAILAAVFFFVLFYASAVFIGIF YHGCTKNRGIWMQIPQSSEDDSSSTLISPNSTPTSYGTVSNSDSVRRNKELGAVPRHSVLPKVTTDDDSSIDSDEIDFLL DADSDKEVIRTKTVVCVSDLSRKKYKREHKKYTLYWSTKNRGIWMQIPQSSE |
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