Gene
| Gene Model ID | pfu_aug2.0_845.1_17882 |
|---|---|
| Locus | scaffold845.1 : 84476 ... 116080 : + |
| To GenomeBrowser | scaffold845.1:84476..116080 |
| Genes list of scaffold | scaffold845.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| succinyl- :3-ketoacid coenzyme a transferase mitochondrial isoform x1 | GO:0005739 GO:0008260 GO:0042221 GO:0044248 GO:0044282 GO:0046950 GO:1901575 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_845.1_17882.t1 | 4 | 1 | CoA_trans | 2 | 35 | 1.4e-36 | 125.7 | 5.3e-11 | 7.8e-07 | 28.4 |
| pfu_aug2.0_845.1_17882.t1 | 4 | 2 | CoA_trans | 62 | 175 | 1.4e-36 | 125.7 | 4.5e-29 | 6.6e-25 | 87.5 |
| pfu_aug2.0_845.1_17882.t1 | 4 | 3 | CoA_trans | 176 | 203 | 1.4e-36 | 125.7 | 0.0031 | 45.0 | 3.1 |
| pfu_aug2.0_845.1_17882.t1 | 4 | 4 | CoA_trans | 209 | 237 | 1.4e-36 | 125.7 | 0.00074 | 11.0 | 5.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_845.1_17882.t1 | gi|675646226|ref|XP_008990371.1| | PREDICTED: LOW QUALITY PROTEIN: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial [Callithrix jacchus] | 0.0 |
| pfu_aug2.0_845.1_17882.t1 | gi|156400778|ref|XP_001638969.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_845.1_17882.t1 | gi|221042836|dbj|BAH13095.1| | unnamed protein product [Homo sapiens] | 0.0 |
| pfu_aug2.0_845.1_17882.t1 | gi|524909813|ref|XP_005109804.1| | PREDICTED: succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_845.1_17882.t1 | gi|386780758|ref|NP_001247521.1| | succinyl-CoA:3-ketoacid-coenzyme A transferase 1, mitochondrial precursor [Macaca mulatta] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_845.1_17882.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_845.1_17882.t1 atgttcaatggatttaactacatcatggaacaagccattactggagacttcgctctgatcaaggcatggaaagctgacaa gaatggaaacctgacgttcaggtataacaaggacaagagaatgagaacaaggaaggagaaaatggaggtgacagagactg taagtccatcagctaaacgaagggagaaaattatacggagagcagctctagagttttatgatggaatctatgctaatttg ggtataggcatgcctatgttggccagtaattacatccctccaggaatgacggtacatcttcaaagtgaaaatggtatcct aggattgggtccatttccaaggaaaggtgaagaagatgcagatctgataaacgctggtaaagaaacagttacttcccttc ctggcagctcttttttctccagtgatgagtcattcgcaatgatcagaggaggccatattgacctgacaatccttggtgct atgcaggtgtcacagtacggagatctggcaaactggatgattccttgtgtgtttgagattgatccagagagaggtctgaa gttatcagaaatagctgaaggtgtagatgtacaggacattgtagaaaacacaggctgtgaattcaggtgtgtgtttgaga ttgatcctgagagaggtctgaagttaacagaagtagctgaaggtgtagatgtacaggacattgtagaaaacacaggctgt gaattcagggagggtagcagagatgaaggtgaatcagacagcggggaggaaccagcccaggatttcagtatcaaccaaat ggaattactggagctagaaatgagggcaagggccatcaaggccatgctgaaagctcaggaggtcaaggacgttcataaac ccgaggagggttga |
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Protein
| Protein ID | pfu_aug2.0_845.1_17882.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_845.1_17882.t1 MFNGFNYIMEQAITGDFALIKAWKADKNGNLTFRYNKDKRMRTRKEKMEVTETVSPSAKRREKIIRRAALEFYDGIYANL GIGMPMLASNYIPPGMTVHLQSENGILGLGPFPRKGEEDADLINAGKETVTSLPGSSFFSSDESFAMIRGGHIDLTILGA MQVSQYGDLANWMIPCVFEIDPERGLKLSEIAEGVDVQDIVENTGCEFRCVFEIDPERGLKLTEVAEGVDVQDIVENTGC EFREGSRDEGESDSGEEPAQDFSINQMELLELEMRARAIKAMLKAQEVKDVHKPEEG |
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