Gene
| Gene Model ID | pfu_aug2.0_846.1_21203 |
|---|---|
| Locus | scaffold846.1 : 53723 ... 54688 : + |
| To GenomeBrowser | scaffold846.1:53723..54688 |
| Genes list of scaffold | scaffold846.1 |
| Synonym | pfu_aug1.0_16385.1_10914 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_846.1_21203.t1 | 1 | 1 | PTS_2-RNA | 10 | 166 | 1.5e-20 | 73.2 | 1.3e-24 | 1.9e-20 | 72.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_846.1_21203.t1 | gi|145486888|ref|XP_001429450.1| | hypothetical protein [Paramecium tetraurelia strain d4-2] | 2.0e-17 |
| pfu_aug2.0_846.1_21203.t1 | gi|514685627|ref|XP_004990392.1| | tRNA phosphotransferase 1 [Salpingoeca rosetta] | 6.0e-17 |
| pfu_aug2.0_846.1_21203.t1 | gi|597913813|ref|XP_007304205.1| | hypothetical protein STEHIDRAFT_121433 [Stereum hirsutum FP-91666 SS1] | 5.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_846.1_21203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_846.1_21203.t1 atgtccgctgctgaattcgctgatttccgccaacttgttctcgccttgagacatgaccagtccctaccatataactcaca tggctgggtccttacagaagacctccagaagaggccgcacttccatcgctttgataaagactttgtcagatatctggatg aagtcattggcaaccctagactagaagtcactccagatggtcgtgcagtccgagccacaaacggtcacaccatccacata tctgacgaaggccttctgacacctataactgacgcctctcaggtaccatactgcgtccatggaacaacgagagatgtcat taagaagatcaagctgtacggtcttcacaggatggaccgccattatatacattttgcaagccacccagatgacgttaaac gcaactcagagatactgatccatttggacgttgctaagtacctacggcggaatcccggaaaactcttctataccagaagc agcaacattgttaccatgggaaacaaatttggttacgtgaaaccatgtttcttcagaaccatggagctcctgtactag |
|
Protein
| Protein ID | pfu_aug2.0_846.1_21203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_846.1_21203.t1 MSAAEFADFRQLVLALRHDQSLPYNSHGWVLTEDLQKRPHFHRFDKDFVRYLDEVIGNPRLEVTPDGRAVRATNGHTIHI SDEGLLTPITDASQVPYCVHGTTRDVIKKIKLYGLHRMDRHYIHFASHPDDVKRNSEILIHLDVAKYLRRNPGKLFYTRS SNIVTMGNKFGYVKPCFFRTMELLY |
|