Gene
| Gene Model ID | pfu_aug2.0_846.1_21206 |
|---|---|
| Locus | scaffold846.1 : 84886 ... 102360 : + |
| To GenomeBrowser | scaffold846.1:84886..102360 |
| Genes list of scaffold | scaffold846.1 |
| Synonym | pfu_aug1.0_2114.1_00974 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| dna-directed rna polymerases i and iii subunit rpac1 isoform x1 | GO:0001054 GO:0001056 GO:0003677 GO:0005666 GO:0005736 GO:0006360 GO:0006383 GO:0046983 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_846.1_21206.t2 | 3 | 1 | RNA_pol_A_bac | 10 | 26 | 3.1e-23 | 82.0 | 2.0 | 15000.0 | -3.9 |
| pfu_aug2.0_846.1_21206.t2 | 1 | 1 | RNA_pol_L | 58 | 277 | 2.0e-17 | 62.0 | 3.4e-21 | 2.5e-17 | 61.7 |
| pfu_aug2.0_846.1_21206.t2 | 3 | 2 | RNA_pol_A_bac | 89 | 119 | 3.1e-23 | 82.0 | 3.6e-11 | 2.7e-07 | 30.7 |
| pfu_aug2.0_846.1_21206.t2 | 3 | 3 | RNA_pol_A_bac | 127 | 170 | 3.1e-23 | 82.0 | 8.3e-17 | 6.2e-13 | 48.8 |
Transcript
| Transcript ID | pfu_aug2.0_846.1_21206.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_846.1_21206.t1 atggacagaatagaagatatcagaacgcgagttaccctaaacgagcatggaattgacaatgtacacagtacagattttcc tggggaatatgatggttatgatgatgcatgggaccaacagaaatttgaaaaggatttccgtattgacatgataaagatga gtcacgatgagctggagtttgatatggttggtattgatgctgccatagccaatgctttccgcaggatacttttagcagag gtaccaacaatggctatagagaaggttttcatttataacaacacttctataatccaagatgaggtgctggcacatagact tggccttataccaatcaaagctgacccacggctgtttgaattcagatcagaaggtaataagtttaaagatggtgatctta gacctgtacatgatgatatactgattgccaagctcagacctggtcaggaaatagatcttagagtccattgtgtcaaaggg tttggaaaagatcatgccaaattttcaccagttgcaacagcctcatatagacttctgccagaaattacactactgaagcc cgtcaaaggagaattagccaaaatactaaagaaatgtttctcaccaggagttattgaagtggatgggaaaggatccaata aaacagcccgagtagccaatgctaggaaggacacatgtagtagggaggtactccggcatgacgacttaaaagatttggtt aaactcagccgcatcagaaaccatttcatcttctctgtagagtctacaggtatcttaccccctgatatactggtagagga ggccataaaagtgctgatgtcaaagtgtcggactttcatgaacgaattgtcacaagctacctga |
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| Transcript ID | pfu_aug2.0_846.1_21206.t2 |
| Definition | - |
>pfu_aug2.0_846.1_21206.t2 atggacagaatagaagatatcagaacgcgagttaccctaaacgagcatggaattgacaatgtacacagtacagattttcc tggggaatatgatggttatgatgatgcatgggaccaacagaaatttgaaaaggatttccgtattgacatgataaagatga gtcacgatgagctggagtttgatatggttggtattgatgctgccatagccaatgctttccgcaggatacttttagcagag gtaccaacaatggctatagagaaggttttcatttataacaacacttctataatccaagatgaggtgctggcacatagact tggccttataccaatcaaagctgacccacggctgtttgaattcagatcagaagccaatatacattttaaagatggtgatc ttagacctgtacatgatgatatactgattgccaagctcagacctggtcaggaaatagatcttagagtccattgtgtcaaa gggtttggaaaagatcatgccaaattttcaccagttgcaacagcctcatatagacttctgccagaaattacactactgaa gcccgtcaaaggagaattagccaaaatactaaagaaatgtttctcaccaggagttattgaagtggatgggaaaggatcca ataaaacagcccgagtagccaatgctaggaaggacacatgtagtagggaggtactccggcatgacgacttaaaagatttg gttaaactcagccgcatcagaaaccatttcatcttctctgtagagtctacaggtatcttaccccctgatatactggtaga ggaggccataaaagtgctgatgtcaaagtgtcggactttcatgaacgaattgtcacaagctacctga |
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Protein
| Protein ID | pfu_aug2.0_846.1_21206.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_846.1_21206.t1 MDRIEDIRTRVTLNEHGIDNVHSTDFPGEYDGYDDAWDQQKFEKDFRIDMIKMSHDELEFDMVGIDAAIANAFRRILLAE VPTMAIEKVFIYNNTSIIQDEVLAHRLGLIPIKADPRLFEFRSEGNKFKDGDLRPVHDDILIAKLRPGQEIDLRVHCVKG FGKDHAKFSPVATASYRLLPEITLLKPVKGELAKILKKCFSPGVIEVDGKGSNKTARVANARKDTCSREVLRHDDLKDLV KLSRIRNHFIFSVESTGILPPDILVEEAIKVLMSKCRTFMNELSQAT |
|
| Protein ID | pfu_aug2.0_846.1_21206.t2 |
| Definition | - |
>pfu_aug2.0_846.1_21206.t2 MDRIEDIRTRVTLNEHGIDNVHSTDFPGEYDGYDDAWDQQKFEKDFRIDMIKMSHDELEFDMVGIDAAIANAFRRILLAE VPTMAIEKVFIYNNTSIIQDEVLAHRLGLIPIKADPRLFEFRSEANIHFKDGDLRPVHDDILIAKLRPGQEIDLRVHCVK GFGKDHAKFSPVATASYRLLPEITLLKPVKGELAKILKKCFSPGVIEVDGKGSNKTARVANARKDTCSREVLRHDDLKDL VKLSRIRNHFIFSVESTGILPPDILVEEAIKVLMSKCRTFMNELSQAT |
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