Gene
| Gene Model ID | pfu_aug2.0_85.1_16872 |
|---|---|
| Locus | scaffold85.1 : 52357 ... 63525 : - |
| To GenomeBrowser | scaffold85.1:52357..63525 |
| Genes list of scaffold | scaffold85.1 |
| Synonym | pfu_aug1.0_6058.1_59920 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| methionine--trna mitochondrial-like isoform x1 | GO:0004825 GO:0005759 GO:0006431 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_85.1_16872.t1 | 2 | 1 | tRNA-synt_1g | 31 | 95 | 0.0 | 233.9 | 7.4e-16 | 2.2e-12 | 46.3 |
| pfu_aug2.0_85.1_16872.t1 | 2 | 1 | tRNA-synt_1 | 89 | 126 | 6.5e-13 | 47.5 | 5.5e-05 | 0.16 | 9.9 |
| pfu_aug2.0_85.1_16872.t1 | 2 | 2 | tRNA-synt_1g | 94 | 264 | 0.0 | 233.9 | 0.0 | 0.0 | 186.7 |
| pfu_aug2.0_85.1_16872.t1 | 2 | 2 | tRNA-synt_1 | 149 | 236 | 6.5e-13 | 47.5 | 1.1e-12 | 3.2e-09 | 35.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_85.1_16872.t1 | gi|675855188|ref|XP_009013154.1| | hypothetical protein HELRODRAFT_190723 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_85.1_16872.t1 | gi|260817050|ref|XP_002603400.1| | hypothetical protein BRAFLDRAFT_80392 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_85.1_16872.t1 | gi|242017977|ref|XP_002429460.1| | methionyl-tRNA synthetase, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_85.1_16872.t1 | gi|676496236|ref|XP_009067151.1| | hypothetical protein LOTGIDRAFT_223492 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_85.1_16872.t1 | gi|524868187|ref|XP_005090898.1| | PREDICTED: methionine--tRNA ligase, mitochondrial-like isoform X1 [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_85.1_16872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16872.t1 atgtcctctccagatggaaaagacttcagggagttggtgtattgtttactaccggcactgatgaacatggacttaaggta tgactttattacctatggaacacgaattcaacaagcagcaacaaagagtagtatacagccacagcaatattgtgatcaaa tctccagcaaattcaaggaggtgttttccttagcagggattttgtataatgactacattaggacaacagaaaataggcat aaaaatgaagttattacattttgggtagttatacaaccacaaggttttgaaactgaaatgcgtgaatggatcgagaattt aaaggacatatctgtgtctagaccgagtcagcggctaacttggggaattccagtgcctgatgatccatcacaaacgattt atgtatggctagatgcactggtaaattactatacctcagctaagtcctatgatctgaagttctggccaccggatgtacat gtcgtgggaaaagatattttaaagttccatgcagtttactggccggcattccttctggcagctaatcttcctttacctcg tagggtcctatgtcattcacattggcttgtagaggaaagaaaaatgtccaaaagtctaggcaatgttatagacccttgta ataagatggagaaatattcatgtgatggatttaggtattttctgatgaagtgtgcagtcccacatgctgattcaaattat ttagagagtactgttctagacgtggtgaatgctgacatcgtaaacaacctaggaaacctgttatctcggtgtagtgggaa ggtgcttaatccacgacaaatgattcctgtaatgtctgacgaggcgtgtcaggctaaaatgacagctgaggaaagagaaa tgtttcagtcattattctctctcctagatgaggtaagcccacattatgagtctggaaacatatacaaggccttacagcta atcattcaccatgtcagctgggccaataagatgttccacgatcatgagccatgggagctagtaaaagtgccgtcagagag tgaacacttacaatgtgtacagcacatggtgtacgagacgttacgtgtgtgtacaatcctactacagccagtaataccca gcatggctgtgaagatactcaacagaataaacgtaccaagtgatgagaggatgctacgtaactgtaatatacatataaat gacggtgaaaggccattaggtcaagatgtaggtgtattacttaaaaggattaaaaaataa |
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Protein
| Protein ID | pfu_aug2.0_85.1_16872.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16872.t1 MSSPDGKDFRELVYCLLPALMNMDLRYDFITYGTRIQQAATKSSIQPQQYCDQISSKFKEVFSLAGILYNDYIRTTENRH KNEVITFWVVIQPQGFETEMREWIENLKDISVSRPSQRLTWGIPVPDDPSQTIYVWLDALVNYYTSAKSYDLKFWPPDVH VVGKDILKFHAVYWPAFLLAANLPLPRRVLCHSHWLVEERKMSKSLGNVIDPCNKMEKYSCDGFRYFLMKCAVPHADSNY LESTVLDVVNADIVNNLGNLLSRCSGKVLNPRQMIPVMSDEACQAKMTAEEREMFQSLFSLLDEVSPHYESGNIYKALQL IIHHVSWANKMFHDHEPWELVKVPSESEHLQCVQHMVYETLRVCTILLQPVIPSMAVKILNRINVPSDERMLRNCNIHIN DGERPLGQDVGVLLKRIKK |
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