Gene
| Gene Model ID | pfu_aug2.0_85.1_16876 |
|---|---|
| Locus | scaffold85.1 : 201763 ... 216806 : - |
| To GenomeBrowser | scaffold85.1:201763..216806 |
| Genes list of scaffold | scaffold85.1 |
| Synonym | pfu_aug1.0_9340.1_02746 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cub and sushi domain-containing protein 3-like | GO:0005576 GO:0005737 GO:0007275 GO:0016020 GO:0031982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_85.1_16876.t1 | 4 | 1 | CUB | 42 | 142 | 2.7e-24 | 85.3 | 7.8e-17 | 2.3e-13 | 50.1 |
| pfu_aug2.0_85.1_16876.t1 | 4 | 2 | CUB | 202 | 264 | 2.7e-24 | 85.3 | 2.3e-07 | 0.00068 | 19.6 |
| pfu_aug2.0_85.1_16876.t1 | 4 | 3 | CUB | 291 | 386 | 2.7e-24 | 85.3 | 0.00028 | 0.84 | 9.7 |
| pfu_aug2.0_85.1_16876.t1 | 4 | 4 | CUB | 398 | 439 | 2.7e-24 | 85.3 | 0.0038 | 11.0 | 6.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_85.1_16876.t1 | gi|198433780|ref|XP_002126106.1| | PREDICTED: CUB and sushi domain-containing protein 3-like [Ciona intestinalis] | 2.0e-20 |
| pfu_aug2.0_85.1_16876.t1 | gi|699253773|ref|XP_009861221.1| | PREDICTED: CUB and sushi domain-containing protein 3-like [Ciona intestinalis] | 2.0e-16 |
| pfu_aug2.0_85.1_16876.t1 | gi|585678043|ref|XP_006819256.1| | PREDICTED: deleted in malignant brain tumors 1 protein-like [Saccoglossus kowalevskii] | 2.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_85.1_16876.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16876.t1 atgagtacatgtataccttataaggtcttactaataacgtgttgtctgctgtggctatttgtacaaaagtcaatacaaca atgcagtggtacagcactttccttggtcgctacaaatgtcaggaaccaacgccaaatcttgtcaaaaaactaccccaatg attacgacaacaatttgaggtgtggatggttgatagatgctgggagtaacaacgagagagtggtcatagacgtccttgtc tggtcactagaggaaactcacgattcagtctcattttatgatggagacagtagaatctctctgatattgtcgaaacactc tgggacaagtagatcgccgttcaccgtacgttctagtgggcgttatatgtacctgtacttctacactgataccagcgtta ctcgtccaggatttgtactcacgtattacagcgaatataatgtggccacttccacgcctacccccgctccgagtactgtc atcaccacgatacaaagtttcacctcgtcctgtggttcctctgtcacactgggcagcgtgggagggaaatacctcagctc tcctaactggccatatgcatacaacaactcacttatagtaaaactgacggtttttacaattcacactcagatttacagag atacagtatacatttatgacggaagtaattctgactatcagctagaggcgctgagtggcacacctagcgtcccacgtact tactactcgtcagggcagtatatgagcgtactgtttgtgacggatgcttctaccgtgtactcgggatatacaatggtggc ggagaccgtggctgcatcaatacctagctgtgtatctggtttaccatccccgtcattcctcaacgttggtacagccactg actatttccaatcgcccaactatccatccaattacggcaacagaataccttcttcatcccagaaaaccgaggctcacaac atatcaatcagccctcgtacatatcccttcgaagcgacgtcatttcacaaaatttcacgtgtgtgttttaacgattttac atccatagaacacgactttgattttcacaagacggggtattacacgcatacttacgggaaatacgctctagtgaaattct ccacggattcttcagttgtacggagagggtttaaattcagtgtctatcttggtgaatatcgaggtgcttgtgaggctagt ggtgtcctgtatacgttatgtagtcacaagacggggtattacacgcatacttacgggaaatacgctctagtgaaattctc cacggattcttcagttgtacggaatgggtttaaattcagtgtctatcttggtgaatatcgagggaatgctgatatctcta cagagaaatccacatatgacaactccgaaaacagcgcaatagccgccactataatgattcctattgtgataattactgtg tgtgttattgctatagtgtgtaaaataagagcatctagaaatagaccgacggtatccaccccgaaaactacagcaggaat taccatgacactgaaagaaaaggtggacaagacacctagcggacggcgaaagaaaaatgtggtgacacctcatcagcaac ctgcacaaccgccactgcaacatcaaatttggacgcaacctacgccgtacccaccaccttcagcaccaccaatgcatcag tactcggaccctgcgtatccacccacacaaagtgcctacatgcctaattataatacccaatatacctcaacacctcagga aaccagtgttcctaatccctttgaatataaaccatatgcatattcctga |
|
Protein
| Protein ID | pfu_aug2.0_85.1_16876.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16876.t1 MSTCIPYKVLLITCCLLWLFVQKSIQQCSGTALSLVATNVRNQRQILSKNYPNDYDNNLRCGWLIDAGSNNERVVIDVLV WSLEETHDSVSFYDGDSRISLILSKHSGTSRSPFTVRSSGRYMYLYFYTDTSVTRPGFVLTYYSEYNVATSTPTPAPSTV ITTIQSFTSSCGSSVTLGSVGGKYLSSPNWPYAYNNSLIVKLTVFTIHTQIYRDTVYIYDGSNSDYQLEALSGTPSVPRT YYSSGQYMSVLFVTDASTVYSGYTMVAETVAASIPSCVSGLPSPSFLNVGTATDYFQSPNYPSNYGNRIPSSSQKTEAHN ISISPRTYPFEATSFHKISRVCFNDFTSIEHDFDFHKTGYYTHTYGKYALVKFSTDSSVVRRGFKFSVYLGEYRGACEAS GVLYTLCSHKTGYYTHTYGKYALVKFSTDSSVVRNGFKFSVYLGEYRGNADISTEKSTYDNSENSAIAATIMIPIVIITV CVIAIVCKIRASRNRPTVSTPKTTAGITMTLKEKVDKTPSGRRKKNVVTPHQQPAQPPLQHQIWTQPTPYPPPSAPPMHQ YSDPAYPPTQSAYMPNYNTQYTSTPQETSVPNPFEYKPYAYS |
|