Gene
| Gene Model ID | pfu_aug2.0_85.1_16879 |
|---|---|
| Locus | scaffold85.1 : 233037 ... 247976 : - |
| To GenomeBrowser | scaffold85.1:233037..247976 |
| Genes list of scaffold | scaffold85.1 |
| Synonym | pfu_aug1.0_39218.1_12365 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| pleiotropic regulator 1 | GO:0005634 GO:0044763 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_85.1_16879.t1 | 1 | 1 | DUF4371 | 45 | 157 | 6.5e-08 | 32.4 | 2.4e-11 | 1.2e-07 | 31.5 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 1 | WD40 | 356 | 365 | 0.0 | 155.2 | 0.77 | 3800.0 | -2.0 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 2 | WD40 | 729 | 767 | 0.0 | 155.2 | 8.1e-12 | 4.0e-08 | 32.8 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 3 | WD40 | 772 | 809 | 0.0 | 155.2 | 8.8e-12 | 4.3e-08 | 32.7 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 4 | WD40 | 815 | 851 | 0.0 | 155.2 | 4.9e-11 | 2.4e-07 | 30.3 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 5 | WD40 | 863 | 876 | 0.0 | 155.2 | 1.4e-06 | 0.0069 | 16.2 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 6 | WD40 | 884 | 913 | 0.0 | 155.2 | 3.4e-06 | 0.017 | 15.0 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 7 | WD40 | 922 | 958 | 0.0 | 155.2 | 1.3e-08 | 6.3e-05 | 22.6 |
| pfu_aug2.0_85.1_16879.t1 | 8 | 8 | WD40 | 980 | 1008 | 0.0 | 155.2 | 6.7e-05 | 0.33 | 10.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_85.1_16879.t1 | gi|557024511|ref|XP_006012435.1| | PREDICTED: pleiotropic regulator 1-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_85.1_16879.t1 | gi|727064448|ref|XP_010410125.1| | PREDICTED: pleiotropic regulator 1 [Corvus cornix cornix] | 0.0 |
| pfu_aug2.0_85.1_16879.t1 | gi|543342605|ref|XP_005517626.1| | PREDICTED: pleiotropic regulator 1 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_85.1_16879.t1 | gi|683893798|ref|XP_009099458.1| | PREDICTED: pleiotropic regulator 1 [Serinus canaria] | 0.0 |
| pfu_aug2.0_85.1_16879.t1 | gi|704163073|ref|XP_010144398.1| | PREDICTED: pleiotropic regulator 1, partial [Buceros rhinoceros silvestris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_85.1_16879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16879.t1 atgacagagggaagtcctgctagggagagctgtgtcggttgggtagaagactcgggttctgctacggtagccagattggt cgaaccaggtgccactcagcttagagatctgcaggttgataagcacaccagctactctcacaattcttcgatacaggagt ttcagttagctatttcacaggttttagagagtggtctgatagataaggttaagaaatcaggtgttttttctgtcatgtta gatgagtcaactgatgtttctgttcaccagaacatggtagtatatatcaggtatttagtggatagtttgggtagacctag tccagttacatcttttctcactgttaggcagctgtcagttgcgaatgctgagaccattacctcccagttgttagatgctc tgtctagttatgggcttgatgtagggaatctggtaggtgtgtctactgatggagctagtgtcatggtgggctgcaagtca ggtgttgtctcgagactcaagcgtgataaccctggcctgttgtccactcattgcatagcccataggttagctttggctag tggtggggctgctgataaggtccagtatctggttaagtttcaggaaattctaaattccatctacaagtactttcattact ctcctaagaacatgggtaggttagaggcaatccagtcagttctcactgttcactccactaggtttaaggaagtctttcat actaggtggttaagttttgagggatctgtccaggctatcattcagaattactctgctttgctttctgtctttcttgagga aaattctgccaaggctctttctttgcacaagccagtgtcaacttacaagtttctgtattgtgctcactatctttgtgatg tgatgaggcagttgtgcattctttgtaaggcttatcaggcaagtgatattgacttctctcaggttaaccctttgctccac tctacagtgtcagttctaaagcagtacagggatggtaagtctggtcctgccttggtcaagttcatgaaggtcactccatc tgaacccactttggactcatctgggctatgtacttttgagtttgaaggtcacactattagggatagtgctagtcagagac aagaggcagtcaggtcatgtgatcagtttgtgtctgaggttgtcaggaacttggaggtgaggtttacaggtgagggagat actaaggtccttactgcacttacagccatgtttgatcctactgttgtttcaggcaaggggttagggtctgtacagttaga ggaactagataggtttgtgagtaagtctgagttgggagatcagggttgcttggaggaggaagttgtagggtttcatgcct ttgtgaaggagtcagtttccatgggatcagtcagtgttgactcagtcagggacatgattcagtttgctgtgaggatgaag gagaggtttccattggttagtaggttaggtgagaggctactggttctccctgtgtcaactgtggattgtgagaggggctt cagcaagcagaacatcataaagactgacctcagaaacagcctgaaggaggtgcagaagcactcggtgcataccttggttt tccgttcactgaagagaacacatgatatgttcatctcagaacaaggaattcccccttcaagagatgccaggagtcataca tcacagtgtctactgtataatgaaccatttagggatttccaaatgtccaactccaacataccacttgtaggcagacttca cattatgaggtcatataatcaatggcttgttaagcactgctttgacagaccatttgataatgatgtcacatgtatatata agtctgccaacagaccggaactattccaaatttttattggatgggtgacacaagatccctctatacaaggcacacatcct tatcctaatggacctggtatccagctttctgatggtaccatgatgcagtcagatcctagccaagctggagcaatggagat gatgttgtatgaccatagcaggaacatggagattccgtcaggagcaagtgtaaatgatatacgacaaaatgctggagcat cagaaagggtggatccatctagtgctcttgttaccattggtcaacaacaagcacttgttcctaaaaaagcacccacaatg ccaaagccatcatggcatccaccttggaagttatatagggtgataagtggccatttaggctgggttagatgtatagctgt agaaccaggaaatgaatggtttgtgactggtgctggtgatagagttattaagatctgggatcttgcaagtggtaccttga agttatcccttactggccatgtgagcacagtaaggggtgtagtagtcagtccaagacagccctacctattctcatgtggt gaggataaaatggtcagatgttgggacctggaatataataagactatcaggcattatcatggtcacctgagtgcttgtta ttcaatagatctccaccctaccatagatgtcctgtgtacatgtggacgtgacggtacagcacgcgtgtgggacatacgta ccaaagntcaggcagcagaactacaggtgatcacagggagtcatgattgtaccataagattatgggatttagctgctggc agatcacgtgttacactcacaaatcataaaaagagcgtcagagcactaactcttcatccaaaacagtacacatttgcatc agcttctcctgataatgtaaaacaatggaagtttccagatggtaacttcatacagaatctgtcaggacataatgctataa ttaatgcccttgcctgcaatcctgatggtgttctagtatctggagctgataatggttccatgtttatgtgggactggagg acaggatataacttccagcgtgtccaggcagcagcacaacctggatctatagattcggagtcaggaatatttgctatgac gtttgatgtcagcggaagtcgactgttgacagcagaggccgacaaaaccatcaaaatatacaaggaggacgaatcagcta ctgaagaaactcaccccattaactggagaccagatattgtgaagaagaaaagatactga |
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Protein
| Protein ID | pfu_aug2.0_85.1_16879.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16879.t1 MTEGSPARESCVGWVEDSGSATVARLVEPGATQLRDLQVDKHTSYSHNSSIQEFQLAISQVLESGLIDKVKKSGVFSVML DESTDVSVHQNMVVYIRYLVDSLGRPSPVTSFLTVRQLSVANAETITSQLLDALSSYGLDVGNLVGVSTDGASVMVGCKS GVVSRLKRDNPGLLSTHCIAHRLALASGGAADKVQYLVKFQEILNSIYKYFHYSPKNMGRLEAIQSVLTVHSTRFKEVFH TRWLSFEGSVQAIIQNYSALLSVFLEENSAKALSLHKPVSTYKFLYCAHYLCDVMRQLCILCKAYQASDIDFSQVNPLLH STVSVLKQYRDGKSGPALVKFMKVTPSEPTLDSSGLCTFEFEGHTIRDSASQRQEAVRSCDQFVSEVVRNLEVRFTGEGD TKVLTALTAMFDPTVVSGKGLGSVQLEELDRFVSKSELGDQGCLEEEVVGFHAFVKESVSMGSVSVDSVRDMIQFAVRMK ERFPLVSRLGERLLVLPVSTVDCERGFSKQNIIKTDLRNSLKEVQKHSVHTLVFRSLKRTHDMFISEQGIPPSRDARSHT SQCLLYNEPFRDFQMSNSNIPLVGRLHIMRSYNQWLVKHCFDRPFDNDVTCIYKSANRPELFQIFIGWVTQDPSIQGTHP YPNGPGIQLSDGTMMQSDPSQAGAMEMMLYDHSRNMEIPSGASVNDIRQNAGASERVDPSSALVTIGQQQALVPKKAPTM PKPSWHPPWKLYRVISGHLGWVRCIAVEPGNEWFVTGAGDRVIKIWDLASGTLKLSLTGHVSTVRGVVVSPRQPYLFSCG EDKMVRCWDLEYNKTIRHYHGHLSACYSIDLHPTIDVLCTCGRDGTARVWDIRTKXQAAELQVITGSHDCTIRLWDLAAG RSRVTLTNHKKSVRALTLHPKQYTFASASPDNVKQWKFPDGNFIQNLSGHNAIINALACNPDGVLVSGADNGSMFMWDWR TGYNFQRVQAAAQPGSIDSESGIFAMTFDVSGSRLLTAEADKTIKIYKEDESATEETHPINWRPDIVKKKRY |
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