Gene
| Gene Model ID | pfu_aug2.0_85.1_16886 |
|---|---|
| Locus | scaffold85.1 : 373588 ... 393653 : + |
| To GenomeBrowser | scaffold85.1:373588..393653 |
| Genes list of scaffold | scaffold85.1 |
| Synonym | pfu_aug1.0_21461.1_54758 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_85.1_16886.t2 | 2 | 1 | RAI16-like | 114 | 214 | 3.80004e-41 | 141.1 | 4.3e-29 | 6.3e-25 | 87.8 |
| pfu_aug2.0_85.1_16886.t2 | 2 | 2 | RAI16-like | 206 | 294 | 3.80004e-41 | 141.1 | 6.2e-20 | 9.2e-16 | 57.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_85.1_16886.t2 | gi|731503072|ref|XP_003417567.2| | PREDICTED: protein FAM160A1 [Loxodonta africana] | 0.0 |
| pfu_aug2.0_85.1_16886.t2 | gi|260833248|ref|XP_002611569.1| | hypothetical protein BRAFLDRAFT_117172 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_85.1_16886.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16886.t1 atgtttgagcagttgatcagccagtcacaccaacttttgctaattcataaagccattatacagcctctactgaagcttct ttctctttgtgccagcaccgttaagttagataccgaaaacaaacttgtcctagttttacatcagctatgtgtatgcatat ctcaggagactttgattttggagagtttctttaacactagtgctaaccacggtccagctaggttcctcatcttctcacta ttgataccttacatacatagggagggaaaagtgggtcaattagccagagatgccctacttttgattatgactttatcatc aaaatacccgcatattggagtgtacatcgctgaaaattcagacttttgtcctgtccttgcgacaggattgagcggtttgt attcctccctgcctcgtaaaattccatgctacacagacgaatggcaccagttcacacaagatgatatcaaccatatccca gaattacagatgttccttaactccctggaattctgtaatgccgtcactcagaattccagagaggaggtgatagctgccac tgcatatctagaattatttcttcggaaagctacggaacctgaactcatcaaaaccttccttaagttcatactcactgaac agaatgatgaaattgtcatactggattcccttgtgaccaggataaatagtagctctaagccattatgtgttgtgtcattg tccttgtttaaaacattggtggatctcaactgtgaagatgttatgtatcagctcctttttaaatatcttgtaccttgcac acatgtaatggtcagtcaacgacgtaatgtcaaggaccttgatctctacggaaaaagtgctgagagattcctttccctcc gtccaagctgttgtgtacctaccgacaacgaaaataggacgcaatccacttcttctgaaagagcagctacagtgtcctct tcagaacagcaaaagtctggcttccctacaacgagtatagcttcacagcttaagaactacgagactgattacagcgatta tctagtagaggcccgacaacagctagagaattgtgcaaaggcttgtggcacatggacttacccttacgatgggaattatc cttctgaagatatcttctcggaattcggagaaaattccatgcaaaactgtgatactgccccttccattgaggacaaactt gggtttagtgcatcattgtctgattctgggacagagagcaataattcgaaggccgcaagtgttcaattcctttatcatgg agatacgttagcatcgtcgattccctctcagaagtccgaaggtaccctttccccttcaactcagctggacgatgatgtct ttcagagtgacatttccagttcatatcagtccaaaggtagtgatttatcggagattctacgtaattacgatagatcaagt ggagacgattgcattagtagtatgacagactctaatgatgaaggcgatttcttgtcctacttagaagggatggaaactcc accaggcgagaatgggtctctggaagagagtatagaatctctagaagccgttttaaataagtttatctccttttcctctg tgactagctcttgttcaaaatctgaatcctgtgatagtagtttagctaattcaaatccgaaaccatgtgaagaaccttca ccacatagtactggtagtaaatgtgttgatagattgacagatggatcagatcagatggaaaacacttctagtaatttaag taacccaagttctgtagatagcaaaaaagcaaaatgtgatggaacaacatttgaagtgatagaggatgttgactcaaatg ctcaagtaaggaaccttgccatggaaacaccctctcccaaagacagcacaagttttatcgacatatcaatgtcccatttt aaaaaagatacaaaagactcattatcacttgatgtttctcagtcttctgagtactcggattcaatacgcaggaattcgtc gaaagacgaaggtttcagcaagagtgtaagcttcaatctcacccctgtttcttctatgcagtccacatcatccatttccc agaattcatcagcagctatagtcagagtgccttcagaaccggcgattaaaatgtcaccaaaccaaccaaacattggtgcc tttctgatggccttattttgcaagctggatggaatgatgcagaatagtctacctgttaacctcctattaacggggattat ttcccgtttggctgcctatcctcagccgttactccgttccttcttactaagtcataatcttgtattccaaccctctgtca aatcactccttcaggttcttacgtcggtgcgacagaaagtcgatcattttgccatgacagtgccaagctttgagggtctg ctgttgaaagcaagacagacattggtgaagagggaggagaactgggtatctggtgtggtaccaagaagtccttatctaca aaacactgtcagtcctatcaaggccccacccgttgttgagaacaatactaaagaaaagaagaaacttagtctagcagatt tattcaaacgatctcccacaaaaaggacccttccgaccatcggaaaaggaggacctcaacttcaagttgtccagggaggg aggggttaccgttatataaactaccaaaacagaccacaggaggtggtgcaaaacccgatggacttaccgaaaatacggaa cgctgtgtactgtgcaatagttttagaagaattcttaaaggaacttgcagctcttagccaagaacatgctgttatatata tggacgatgggtattcaagttacgaagaagttatgtcaatgtaa |
|
| Transcript ID | pfu_aug2.0_85.1_16886.t2 |
| Definition | - |
>pfu_aug2.0_85.1_16886.t2 atgtcatggtttaagaaaggcagagctgattccaaatctacgggtcagtctggtaataatgatgatctcaccatcaacag atctcgtactgacacagatcctcagacatgcttggaagtatttcagaatcactggaagcaagcgttacaagtaataggag gggataggaatgggaacacacagaaaaaccagaaatgttccaacgatgaattagaggcagttcttcagaacttcgagcag atgataaatttactggccggggaggaaggactggatgaaaatggacagggaatgcccggacctatccttcattatctatt agaggaaaagatttttgagcgcttctgtgactgggagggaaaagtgggtcaattagccagagatgccctacttttgatta tgactttatcatcaaaatacccgcatattggagtgtacatcgctgaaaattcagacttttgtcctgtccttgcgacagga ttgagcggtttgtattcctccctgcctcgtaaaattccatgctacacagacgaatggcaccagttcacacaagatgatat caaccatatcccagaattacagatgttccttaactccctggaattctgtaatgccgtcactcagaattccagagaggagg tgatagctgccactgcatatctagaattatttcttcggaaagctacggaacctgaactcatcaaaaccttccttaagttc atactcactgaacagaatgatgaaattgtcatactggattcccttgtgaccaggataaatagtagctctaagccattatg tgttgtgtcattgtccttgtttaaaacattggtggatctcaactgtgaagatgttatgtatcagctcctttttaaatatc ttgtaccttgcacacatgtaatggtcagtcaacgacgtaatgtcaaggaccttgatctctacggaaaaagtgctgagaga ttcctttccctccgtccaagctgttgtgtacctaccgacaacgaaaataggacgcaatccacttcttctgaaagagcagc tacagtgtcctcttcagaacagcaaaagtctggcttccctacaacgagtatagcttcacagcttaagaactacgagactg attacagcgattatctagtagaggcccgacaacagctagagaattgtgcaaaggcttgtggcacatggacttacccttac gatgggaattatccttctgaagatatcttctcggaattcggagaaaattccatgcaaaactgtgatactgccccttccat tgaggacaaacttgggtttagtgcatcattgtctgattctgggacagagagcaataattcgaaggccgcaagtgttcaat tcctttatcatggagatacgttagcatcgtcgattccctctcagaagtccgaaggtaccctttccccttcaactcagctg gacgatgatgtctttcagagtgacatttccagttcatatcagtccaaaggtagtgatttatcggagattctacgtaatta cgatagatcaagtggagacgattgcattagtagtatgacagactctaatgatgaaggcgatttcttgtcctacttagaag ggatggaaactccaccaggcgagaatgggtctctggaagagagtatagaatctctagaagccgttttaaataagtttatc tccttttcctctgtgactagctcttgttcaaaatctgaatcctgtgatagtagtttagctaattcaaatccgaaaccatg tgaagaaccttcaccacatagtactggtagtaaatgtgttgatagattgacagatggatcagatcagatggaaaacactt ctagtaatttaagtaacccaagttctgtagatagcaaaaaagcaaaatgtgatggaacaacatttgaagtgatagaggat gttgactcaaatgctcaagtaaggaaccttgccatggaaacaccctctcccaaagacagcacaagttttatcgacatatc aatgtcccattttaaaaaagatacaaaagactcattatcacttgatgtttctcagtcttctgagtactcggattcaatac gcaggaattcgtcgaaagacgaaggtttcagcaagagtgtaagcttcaatctcacccctgtttcttctatgcagtccaca tcatccatttcccagaattcatcagcagctatagtcagagtgccttcagaaccggcgattaaaatgtcaccaaaccaacc aaacattggtgcctttctgatggccttattttgcaagctggatggaatgatgcagaatagtctacctgttaacctcctat taacggggattatttcccgtttggctgcctatcctcagccgttactccgttccttcttactaagtcataatcttgtattc caaccctctgtcaaatcactccttcaggttcttacgtcggtgcgacagaaagtcgatcattttgccatgacagtgccaag ctttgagggtctgctgttgaaagcaagacagacattggtgaagagggaggagaactgggtatctggtgtggtaccaagaa gtccttatctacaaaacactgtcagtcctatcaaggccccacccgttgttgagaacaatactaaagaaaagaagaaactt agtctagcagatttattcaaacgatctcccacaaaaaggacccttccgaccatcggaaaaggaggacctcaacttcaagt tgtccagggagggaggggttaccgttatataaactaccaaaacagaccacaggaggtggtgcaaaacccgatggacttac cgaaaatacggaacgctgtgtactgtgcaatagttttagaagaattcttaaaggaacttgcagctcttagccaagaacat gctgttatatatatggacgatgggtattcaagttacgaagaagttatgtcaatgtaa |
|
Protein
| Protein ID | pfu_aug2.0_85.1_16886.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_85.1_16886.t1 MFEQLISQSHQLLLIHKAIIQPLLKLLSLCASTVKLDTENKLVLVLHQLCVCISQETLILESFFNTSANHGPARFLIFSL LIPYIHREGKVGQLARDALLLIMTLSSKYPHIGVYIAENSDFCPVLATGLSGLYSSLPRKIPCYTDEWHQFTQDDINHIP ELQMFLNSLEFCNAVTQNSREEVIAATAYLELFLRKATEPELIKTFLKFILTEQNDEIVILDSLVTRINSSSKPLCVVSL SLFKTLVDLNCEDVMYQLLFKYLVPCTHVMVSQRRNVKDLDLYGKSAERFLSLRPSCCVPTDNENRTQSTSSERAATVSS SEQQKSGFPTTSIASQLKNYETDYSDYLVEARQQLENCAKACGTWTYPYDGNYPSEDIFSEFGENSMQNCDTAPSIEDKL GFSASLSDSGTESNNSKAASVQFLYHGDTLASSIPSQKSEGTLSPSTQLDDDVFQSDISSSYQSKGSDLSEILRNYDRSS GDDCISSMTDSNDEGDFLSYLEGMETPPGENGSLEESIESLEAVLNKFISFSSVTSSCSKSESCDSSLANSNPKPCEEPS PHSTGSKCVDRLTDGSDQMENTSSNLSNPSSVDSKKAKCDGTTFEVIEDVDSNAQVRNLAMETPSPKDSTSFIDISMSHF KKDTKDSLSLDVSQSSEYSDSIRRNSSKDEGFSKSVSFNLTPVSSMQSTSSISQNSSAAIVRVPSEPAIKMSPNQPNIGA FLMALFCKLDGMMQNSLPVNLLLTGIISRLAAYPQPLLRSFLLSHNLVFQPSVKSLLQVLTSVRQKVDHFAMTVPSFEGL LLKARQTLVKREENWVSGVVPRSPYLQNTVSPIKAPPVVENNTKEKKKLSLADLFKRSPTKRTLPTIGKGGPQLQVVQGG RGYRYINYQNRPQEVVQNPMDLPKIRNAVYCAIVLEEFLKELAALSQEHAVIYMDDGYSSYEEVMSM |
|
| Protein ID | pfu_aug2.0_85.1_16886.t2 |
| Definition | - |
>pfu_aug2.0_85.1_16886.t2 MSWFKKGRADSKSTGQSGNNDDLTINRSRTDTDPQTCLEVFQNHWKQALQVIGGDRNGNTQKNQKCSNDELEAVLQNFEQ MINLLAGEEGLDENGQGMPGPILHYLLEEKIFERFCDWEGKVGQLARDALLLIMTLSSKYPHIGVYIAENSDFCPVLATG LSGLYSSLPRKIPCYTDEWHQFTQDDINHIPELQMFLNSLEFCNAVTQNSREEVIAATAYLELFLRKATEPELIKTFLKF ILTEQNDEIVILDSLVTRINSSSKPLCVVSLSLFKTLVDLNCEDVMYQLLFKYLVPCTHVMVSQRRNVKDLDLYGKSAER FLSLRPSCCVPTDNENRTQSTSSERAATVSSSEQQKSGFPTTSIASQLKNYETDYSDYLVEARQQLENCAKACGTWTYPY DGNYPSEDIFSEFGENSMQNCDTAPSIEDKLGFSASLSDSGTESNNSKAASVQFLYHGDTLASSIPSQKSEGTLSPSTQL DDDVFQSDISSSYQSKGSDLSEILRNYDRSSGDDCISSMTDSNDEGDFLSYLEGMETPPGENGSLEESIESLEAVLNKFI SFSSVTSSCSKSESCDSSLANSNPKPCEEPSPHSTGSKCVDRLTDGSDQMENTSSNLSNPSSVDSKKAKCDGTTFEVIED VDSNAQVRNLAMETPSPKDSTSFIDISMSHFKKDTKDSLSLDVSQSSEYSDSIRRNSSKDEGFSKSVSFNLTPVSSMQST SSISQNSSAAIVRVPSEPAIKMSPNQPNIGAFLMALFCKLDGMMQNSLPVNLLLTGIISRLAAYPQPLLRSFLLSHNLVF QPSVKSLLQVLTSVRQKVDHFAMTVPSFEGLLLKARQTLVKREENWVSGVVPRSPYLQNTVSPIKAPPVVENNTKEKKKL SLADLFKRSPTKRTLPTIGKGGPQLQVVQGGRGYRYINYQNRPQEVVQNPMDLPKIRNAVYCAIVLEEFLKELAALSQEH AVIYMDDGYSSYEEVMSM |
|