Gene
| Gene Model ID | pfu_aug2.0_8517.1_26284 |
|---|---|
| Locus | scaffold8517.1 : 5826 ... 7097 : + |
| To GenomeBrowser | scaffold8517.1:5826..7097 |
| Genes list of scaffold | scaffold8517.1 |
| Synonym | pfu_aug1.0_3811.1_66800 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| e3 ubiquitin-protein ligase trim71 | GO:0005488 GO:0016881 GO:0031047 GO:0044238 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8517.1_26284.t1 | 2 | 1 | zf-B_box | 18 | 56 | 4.8e-11 | 42.3 | 1.1e-06 | 0.0083 | 16.0 |
| pfu_aug2.0_8517.1_26284.t1 | 2 | 2 | zf-B_box | 71 | 109 | 4.8e-11 | 42.3 | 1.2e-11 | 9.0e-08 | 31.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8517.1_26284.t1 | gi|471379210|ref|XP_004377404.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71 [Trichechus manatus latirostris] | 2.0e-09 |
| pfu_aug2.0_8517.1_26284.t1 | gi|586456887|ref|XP_006851648.1| | PREDICTED: E3 ubiquitin-protein ligase TRIM71-like [Chrysochloris asiatica] | 3.0e-09 |
| pfu_aug2.0_8517.1_26284.t1 | gi|71747570|ref|XP_822840.1| | hypothetical protein [Trypanosoma brucei brucei TREU927] | 5.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_8517.1_26284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8517.1_26284.t1 atggatgttaacgattccagctcagtcgacctagagatgttcaagccaacaacaatatgtttaagctgcaaagagggtaa caacgataatatatattgtgtgacatgtcatttggattgctgcattcagtgtattacatcttcacataaagatcactata ttctgccttgttcacattccatagtacaaagcataaaacgtttctctactgacatgtgtacttcacacgaggatgagatc ttgtccatgtattgcgtcacatgcaaaaccccatgttgtcacacatgtatagacgaaaaccatgatggacactccatgtc gacaatcaaatcaatggcaaagcaagcagattctcttcaagcaaaactcattgatgttttaccacaggcaaagtcaaggt gcataaaaatgagagaagattatgacgattatgtgaaattattcaacgtaaccatcactgctatcaaaagtcattttgaa caacttcgttcaaaaattgacgagacggaagttaaaatgctacaaccattgatggctgaatttgaagaagtagagacaat gcaaaaggatattggacagccattactcgaaacggaatgcttggtagaaacgtacaatgcagctaatgaagaggataacc atttcaaaaaggccatctttttctctaattgtcctccccttgaaaatttggaatctaaaaatgtatcccttcctaaaccg gtttcgttcaagcaggttccgttggattttcacctcgcggcaatggtcattatcaaggatcgaatttttttattctggat aaagaattcaacttacaaaacatttataaaaccatag |
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Protein
| Protein ID | pfu_aug2.0_8517.1_26284.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8517.1_26284.t1 MDVNDSSSVDLEMFKPTTICLSCKEGNNDNIYCVTCHLDCCIQCITSSHKDHYILPCSHSIVQSIKRFSTDMCTSHEDEI LSMYCVTCKTPCCHTCIDENHDGHSMSTIKSMAKQADSLQAKLIDVLPQAKSRCIKMREDYDDYVKLFNVTITAIKSHFE QLRSKIDETEVKMLQPLMAEFEEVETMQKDIGQPLLETECLVETYNAANEEDNHFKKAIFFSNCPPLENLESKNVSLPKP VSFKQVPLDFHLAAMVIIKDRIFLFWIKNSTYKTFIKP |
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