Gene
| Gene Model ID | pfu_aug2.0_854.1_14607 |
|---|---|
| Locus | scaffold854.1 : 157666 ... 165640 : + |
| To GenomeBrowser | scaffold854.1:157666..165640 |
| Genes list of scaffold | scaffold854.1 |
| Synonym | pfu_aug1.0_16837.1_54346 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| low-density lipoprotein receptor-related protein 1b-like | GO:0005041 GO:0005515 GO:0006898 GO:0016020 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_854.1_14607.t1 | 3 | 1 | Ldl_recept_a | 18 | 58 | 3.0e-14 | 52.6 | 5.6e-08 | 0.00041 | 20.1 |
| pfu_aug2.0_854.1_14607.t1 | 3 | 2 | Ldl_recept_a | 63 | 101 | 3.0e-14 | 52.6 | 2.2e-08 | 0.00016 | 21.4 |
| pfu_aug2.0_854.1_14607.t1 | 3 | 3 | Ldl_recept_a | 106 | 144 | 3.0e-14 | 52.6 | 5.1e-09 | 3.8e-05 | 23.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_854.1_14607.t1 | gi|557292272|ref|XP_006028664.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B-like [Alligator sinensis] | 3.0e-15 |
| pfu_aug2.0_854.1_14607.t1 | gi|564242618|ref|XP_006278105.1| | PREDICTED: low-density lipoprotein receptor-related protein 1B-like [Alligator mississippiensis] | 4.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_854.1_14607.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_854.1_14607.t1 atgaagttttggaaagcagatttcttttatagtatcaatgtccctagtctttgtcctcctggatatcggagatgttctag aagttcagagtgtattctctccaagttttggtgtgacggaaatgtagattgtggatataataggaaagatgatagtgatg aaactagtgactgtgagactggtccttgtcgagaaggttatcgtaaatgctctatctctaaaagatgtgtgccactagag ttatggtgtaacggagttaaggattgtggacccgatgacaatagtgacgaaccgagtgactgtgaggatatcccatgtcg tccaggatacagaagatgtgcagtctcaaaacattgtgtgccctctgactggtggtgtgatgggaacctggattgtggct ttggtgatacaagtgaggaatcaaatgattgcggatatttaggtcagaataatccaaacaatgaaaaatgccccgcttaa |
|
Protein
| Protein ID | pfu_aug2.0_854.1_14607.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_854.1_14607.t1 MKFWKADFFYSINVPSLCPPGYRRCSRSSECILSKFWCDGNVDCGYNRKDDSDETSDCETGPCREGYRKCSISKRCVPLE LWCNGVKDCGPDDNSDEPSDCEDIPCRPGYRRCAVSKHCVPSDWWCDGNLDCGFGDTSEESNDCGYLGQNNPNNEKCPA |
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