Gene
| Gene Model ID | pfu_aug2.0_857.1_24474 |
|---|---|
| Locus | scaffold857.1 : 212130 ... 214531 : + |
| To GenomeBrowser | scaffold857.1:212130..214531 |
| Genes list of scaffold | scaffold857.1 |
| Synonym | pfu_aug1.0_44075.1_05277 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s20 | GO:0003735 GO:0006412 GO:0016020 GO:0022627 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_857.1_24474.t1 | 1 | 1 | Ribosomal_S10 | 19 | 115 | 5.4e-32 | 109.5 | 4.3e-36 | 6.4e-32 | 109.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_857.1_24474.t1 | gi|40643004|emb|CAD91428.1| | 0.0 | |
| pfu_aug2.0_857.1_24474.t1 | gi|632947793|ref|XP_007889230.1| | PREDICTED: 40S ribosomal protein S20 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_857.1_24474.t1 | gi|675855360|ref|XP_009013240.1| | hypothetical protein HELRODRAFT_97947 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_857.1_24474.t1 | gi|719773090|ref|XP_010219889.1| | PREDICTED: 40S ribosomal protein S20 [Tinamus guttatus] | 0.0 |
| pfu_aug2.0_857.1_24474.t1 | gi|585684387|ref|XP_006812571.1| | PREDICTED: 40S ribosomal protein S20-like [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_857.1_24474.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_857.1_24474.t1 atgtcacacttcaaggacaccaaggctcctgctgaggaggccaccatccatcgtattaaaattactctaaccagcagaaa tgtcaaaagtttagaaaaagtgtgtgctgacctcataaggggagcaaaggagaaacagttgaaagtgaaaggaccagtac gcatgccaaccaaaacactacgtataaccaccaggaaaactccttgtggtgaagggtccaaaacatgggacagataccag atgagaatccacaagagactgatagctcttcacagtccatctgaaatcgtcaagcagattacatccatcagcattgagcc tggagtagaagtcgaggtcaccatcgctgacgcgtaa |
|
Protein
| Protein ID | pfu_aug2.0_857.1_24474.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_857.1_24474.t1 MSHFKDTKAPAEEATIHRIKITLTSRNVKSLEKVCADLIRGAKEKQLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRYQ MRIHKRLIALHSPSEIVKQITSISIEPGVEVEVTIADA |
|