Gene
| Gene Model ID | pfu_aug2.0_858.1_27854 |
|---|---|
| Locus | scaffold858.1 : 99248 ... 131915 : - |
| To GenomeBrowser | scaffold858.1:99248..131915 |
| Genes list of scaffold | scaffold858.1 |
| Synonym | pfu_aug1.0_610.1_15155 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_858.1_27854.t1 | 10 | 1 | TMF_DNA_bd | 19 | 30 | 1.1e-17 | 63.5 | 3.0 | 15000.0 | -5.0 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 1 | TMF_TATA_bd | 726 | 775 | 5.8e-31 | 106.7 | 1.0 | 5200.0 | -2.9 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 2 | TMF_DNA_bd | 729 | 789 | 1.1e-17 | 63.5 | 2.9 | 14000.0 | -4.1 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 2 | TMF_TATA_bd | 776 | 845 | 5.8e-31 | 106.7 | 1.6 | 7700.0 | -3.5 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 3 | TMF_DNA_bd | 791 | 828 | 1.1e-17 | 63.5 | 0.11 | 550.0 | 0.4 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 4 | TMF_DNA_bd | 828 | 900 | 1.1e-17 | 63.5 | 2.3e-21 | 1.1e-17 | 63.5 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 3 | TMF_TATA_bd | 829 | 892 | 5.8e-31 | 106.7 | 0.32 | 1600.0 | -1.2 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 4 | TMF_TATA_bd | 858 | 943 | 5.8e-31 | 106.7 | 3.0 | 15000.0 | -5.9 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 5 | TMF_TATA_bd | 903 | 990 | 5.8e-31 | 106.7 | 0.33 | 1600.0 | -1.3 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 5 | TMF_DNA_bd | 904 | 943 | 1.1e-17 | 63.5 | 0.00029 | 1.4 | 8.7 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 6 | TMF_TATA_bd | 967 | 1045 | 5.8e-31 | 106.7 | 3.0 | 15000.0 | -4.4 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 6 | TMF_DNA_bd | 1004 | 1054 | 1.1e-17 | 63.5 | 0.011 | 56.0 | 3.6 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 7 | TMF_TATA_bd | 1025 | 1114 | 5.8e-31 | 106.7 | 0.091 | 450.0 | 0.5 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 7 | TMF_DNA_bd | 1058 | 1083 | 1.1e-17 | 63.5 | 0.18 | 890.0 | -0.2 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 8 | TMF_DNA_bd | 1099 | 1143 | 1.1e-17 | 63.5 | 5.3e-05 | 0.26 | 11.1 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 8 | TMF_TATA_bd | 1101 | 1174 | 5.8e-31 | 106.7 | 0.073 | 360.0 | 0.8 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 9 | TMF_DNA_bd | 1148 | 1209 | 1.1e-17 | 63.5 | 3.0 | 15000.0 | -7.8 |
| pfu_aug2.0_858.1_27854.t1 | 9 | 9 | TMF_TATA_bd | 1259 | 1374 | 5.8e-31 | 106.7 | 1.2e-34 | 5.8e-31 | 106.7 |
| pfu_aug2.0_858.1_27854.t1 | 10 | 10 | TMF_DNA_bd | 1275 | 1334 | 1.1e-17 | 63.5 | 8.7e-05 | 0.43 | 10.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_858.1_27854.t1 | gi|556975215|ref|XP_005995289.1| | PREDICTED: TATA element modulatory factor isoform X2 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_858.1_27854.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_858.1_27854.t1 atgagttggtgggacagtagttccttttcaagttttgccagccaggcactcaaaaatgcacagaagaaaattgacaaagt cctagacattaaagactctgaaaaagatgatactgaacaagaatctaatgaagcatcacttccaaaaccagaaaacaaag catcctcctggaatacttggctgggaggcacagagggagaggaagataagggaggtcatgaggagaaggagggagaggag gaggggaggagctcctggtcaatgccctgggggatggataccagtttcacaaagcagttcagtccttctgctttaactcc taaatctgaaagcaaaactaagtccacagatgcaaagacttcaaaatccttgctaagccctgtcaaagctgaaatgtcac aaaaggttgaaagtataaagggagaaactgaaaaggatagtaaaggggaagagcaagataaatgtgaaagtgaaagtact gatgcatctggtgcacatagtgataagtcagaaaatgttcttccgaaagtgggggcagttgaagatgatgaatttgataa atctgacattctaaaagtgactgtcagtcccccacaggatcgtgaggcagaaaaagaaacaagagggtctgatccaagcg ttttgcaaattgatgaaactcaaagtgttgtgaaagataaagattttcatgtaacatctagtgacaaagatcatgaaaca gacttccaaaacctaaacaatgaaagtgtaaaagaagacgatacaatcaaaaatgatagaacagaaagtgaagttaacat ccatttaaatgtgccaactgatggaaaatctacgtcatgtgtggaagagactagtgaaaataattcgggaaatgtttcag gtactgctgagatttctttatcagaagaagttattgaagctaaggaagaaagtaaagattctattgaggttggttttcct ggagctgaagaggagagtgatttaggaaaccttccagttcctgagagtgatagcacccttgttgttaatatcagtgaaga agatagagaatacgatgaacagtgtagtgacacggataaaatgggggatagtgccgataatcagcatctttgtgattttc agctgagtgacttagctttatcctctgaaaaatctcaagacgaaattgcatttacaaatcagggagtaaaggatgaaaat tcttgtgatggaggttcactagagtattccttttcatcgttgaaagatgacacaggcatttttccatcaggaaatacaga ctgcgaggaagaaattgttgatcctctgagttcctcatccatagacatatctgctgataaaattcaagaaagtgtgaaaa gcttcttcgatggtgccatagacagtcgaattataaattcggattctacagattcaaacaggatatcagatctgccactc agcccttccactgctagttcgttaggtggtacggactcggacaccaacaaactggacagtagcttggatgcttacacctc agacgatactgtagtggataagatgagtgaagaacagtcttggagtcgagttgtccatggtgaaaatagtacagtgacta ctgagagtagcaacagtcaagatgatctgaccaatcaacaggaaattgaagaaactggtaatgctgaagatatgcaagag tctgaggccaaaaatggcagtagcggtagtgtatctccaagcagctcctacgtcaagtgtatgattgaggaagccatgga cgacaacgctagcgacacacattccaacggaggtgaaaaatcggagtgctctcggagcactggaggtcatgattctgggg atgaaatatcaacaactacttcatctgacattgagattatttccactccgactccgaacggagatggaagcaaagtggtt gatttgtctccccttagaattgctctacagaaaactgccaacagagggagcttgacacacagacgctcagacagtcagtc aacaacgtccagtagagacggacagtgtgatcaactcagcccgggaagagaaacactggattctatggttgacgatgtga actttagtggagagagaagactttcacaggaaactgataagagccagcgatctgaattaccaccccttagtgaagaaaga ctggatattcaacagcagcagaaattacagaagaagctggctgagatgacagaggtactcaacgctagggaaaataaatt agtacaactcagcaaagaaaatcatgatctacttgaatccaacagcatcttgagaagtcaactacagcaggtagaggaag ccagagaagctgaactggaggacattaacaaagtcacaaccgagtttactcagagactgtctgactcagagaaacgagtc aatcaggcaataagggaaaaagaggcagtcaaaaaacaactccaaagggcccaagaagacttggagaaaaagataaagga caagtctttacagaatcttataaaggagaaggaccagcagatagatgaactgatgcaagaaggtgaaaagttatccaagc aacaactacaagtcaacaccataataaagaagctacgtgtaaaagaaaaagaaaacgagtctctcataacttctcaaaag aaaaaattagaagatcagaaatcagaattagatcacctacgtaaagtttgtgaatctaaggatgatctcgaaaagaaaca aactgaggcaataggccagctgaatgctgctgtacagagacaggaaagagaaatgtcaaagttaaagagtgatcatgacg atgcacaagaaagagtacggggccttcagaccgccttagataactcctacaaggagatagcagatctacacagatcaaac gctgcacaggacagtaaagcccatgaagcagcgcttagcgccgagatgcaggtccgagaggagctaaaaatacaactaga ccacgagaggaaagctttcgtacaggagaaagaggcacttgtcatgcagattgaagatttgagactgacactgtcaagaa tggagaaagagcataatagaagggaagatatgctacgtcaagaaatatcagatttacaaaggcatttacaagaagatgag gccagaaatcaagatctgacacagagtgtgacttcagcgaccaggcctttactcagacagatagaaaacttacagtcaac atatgctgcacaatcacagtcatgggagaaagtagagaaaaatctttctgataggcttgttgatgcccaggctcaacttg ccacggcagtagaaaaggaaaggtcagcgacagaggctgtcatggagcttaggtcaaaggtcacaagtttggagacacaa atcagctgtttgaaacaagacaagacacaactcactgccgaattagacctactgaaaacaaaactagaggtgctagagga tgcaaaaaatagtgatattgcacagttagagactgctaagcaggaactgaccaagggactggctgaaattaaaaaggaaa aggttttcctcgaaacacagcttgacatggagaaaacaaaagtagaccaggaaaagaaaaagtttgcattagctcaggac cagatcttacaactagagagggaagcacagcgtcccatttccagaggatctcagtcaccactatctatatccaggacaga gagtatcagcggagagatgccttcaatgtttacatcattcacacaggatgatttagagagaagttttattctatcaccca atgcctcaaagaccagtttatacgagagcatgagacactctggtgcggcttctatactagagaacctacagtcccaactc aaacagagggaaggggaaatagtgcaactcaggaatgatatacagcagctagagaggaccagggagtctatggctcggga acttgttaatctgaccaatcaaaatgaagaactacagagtcaggtggaacaacttccacaatataaatccaagttagagg atgtagatggtcgctacaacgccttgcttcagatgtatggtgaaaaagtcgaggaagctgaggaactacgcatggactta caggacgttaaggaaatgtataaggcacaggctaaaattatgacgtcgcaatag |
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Protein
| Protein ID | pfu_aug2.0_858.1_27854.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_858.1_27854.t1 MSWWDSSSFSSFASQALKNAQKKIDKVLDIKDSEKDDTEQESNEASLPKPENKASSWNTWLGGTEGEEDKGGHEEKEGEE EGRSSWSMPWGMDTSFTKQFSPSALTPKSESKTKSTDAKTSKSLLSPVKAEMSQKVESIKGETEKDSKGEEQDKCESEST DASGAHSDKSENVLPKVGAVEDDEFDKSDILKVTVSPPQDREAEKETRGSDPSVLQIDETQSVVKDKDFHVTSSDKDHET DFQNLNNESVKEDDTIKNDRTESEVNIHLNVPTDGKSTSCVEETSENNSGNVSGTAEISLSEEVIEAKEESKDSIEVGFP GAEEESDLGNLPVPESDSTLVVNISEEDREYDEQCSDTDKMGDSADNQHLCDFQLSDLALSSEKSQDEIAFTNQGVKDEN SCDGGSLEYSFSSLKDDTGIFPSGNTDCEEEIVDPLSSSSIDISADKIQESVKSFFDGAIDSRIINSDSTDSNRISDLPL SPSTASSLGGTDSDTNKLDSSLDAYTSDDTVVDKMSEEQSWSRVVHGENSTVTTESSNSQDDLTNQQEIEETGNAEDMQE SEAKNGSSGSVSPSSSYVKCMIEEAMDDNASDTHSNGGEKSECSRSTGGHDSGDEISTTTSSDIEIISTPTPNGDGSKVV DLSPLRIALQKTANRGSLTHRRSDSQSTTSSRDGQCDQLSPGRETLDSMVDDVNFSGERRLSQETDKSQRSELPPLSEER LDIQQQQKLQKKLAEMTEVLNARENKLVQLSKENHDLLESNSILRSQLQQVEEAREAELEDINKVTTEFTQRLSDSEKRV NQAIREKEAVKKQLQRAQEDLEKKIKDKSLQNLIKEKDQQIDELMQEGEKLSKQQLQVNTIIKKLRVKEKENESLITSQK KKLEDQKSELDHLRKVCESKDDLEKKQTEAIGQLNAAVQRQEREMSKLKSDHDDAQERVRGLQTALDNSYKEIADLHRSN AAQDSKAHEAALSAEMQVREELKIQLDHERKAFVQEKEALVMQIEDLRLTLSRMEKEHNRREDMLRQEISDLQRHLQEDE ARNQDLTQSVTSATRPLLRQIENLQSTYAAQSQSWEKVEKNLSDRLVDAQAQLATAVEKERSATEAVMELRSKVTSLETQ ISCLKQDKTQLTAELDLLKTKLEVLEDAKNSDIAQLETAKQELTKGLAEIKKEKVFLETQLDMEKTKVDQEKKKFALAQD QILQLEREAQRPISRGSQSPLSISRTESISGEMPSMFTSFTQDDLERSFILSPNASKTSLYESMRHSGAASILENLQSQL KQREGEIVQLRNDIQQLERTRESMARELVNLTNQNEELQSQVEQLPQYKSKLEDVDGRYNALLQMYGEKVEEAEELRMDL QDVKEMYKAQAKIMTSQ |
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