Gene
| Gene Model ID | pfu_aug2.0_86.1_20193 |
|---|---|
| Locus | scaffold86.1 : 237664 ... 258561 : + |
| To GenomeBrowser | scaffold86.1:237664..258561 |
| Genes list of scaffold | scaffold86.1 |
| Synonym | pfu_aug1.0_26070.1_33540 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| structure-specific endonuclease subunit slx4 | GO:0006259 GO:0044424 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_86.1_20193.t1 | 1 | 1 | Slx4 | 1482 | 1541 | 4.1e-16 | 58.4 | 2.4e-19 | 1.2e-15 | 57.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_86.1_20193.t1 | gi|676459767|ref|XP_009055408.1| | hypothetical protein LOTGIDRAFT_228558 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_86.1_20193.t1 | gi|513209168|ref|XP_414962.4| | PREDICTED: structure-specific endonuclease subunit SLX4 isoform X4 [Gallus gallus] | 2.0e-29 |
| pfu_aug2.0_86.1_20193.t1 | gi|513209165|ref|XP_004945436.1| | PREDICTED: structure-specific endonuclease subunit SLX4 isoform X5 [Gallus gallus] | 2.0e-29 |
| pfu_aug2.0_86.1_20193.t1 | gi|542167186|ref|XP_005492181.1| | PREDICTED: structure-specific endonuclease subunit SLX4 [Zonotrichia albicollis] | 3.0e-28 |
| pfu_aug2.0_86.1_20193.t1 | gi|663289722|ref|XP_008501281.1| | PREDICTED: LOW QUALITY PROTEIN: structure-specific endonuclease subunit SLX4 [Calypte anna] | 4.0e-28 |
Transcript
| Transcript ID | pfu_aug2.0_86.1_20193.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_86.1_20193.t1 atggacaagagaaaaagaacgaagctgactttacagaaaaaaggaaagcaatctgatgcggcaacattaacatcagctat ttgtagtattcctgatgtgctgaatgaaacaagtgaatttcaggtcccagtttcatctgttcctctaagacagcaaaata ggaaagtaaagttagtaaaaaaagacaatatacctccaaaaggatcagctgtgaaggagattgaacctagagatgacgag gcatcaaaatcagctaatgataatgaaaatggaattctttatgataaagctggtacatccatctcaattaaaaatgaagg atctacgtctttaacagagaagacagatgaagaagggaaatgtcctctgtgtagtgtcacaataaacaaggctcagcttc attcacactttcagcaatgcctgcaggagaagtttaagcatacctcatccttagattttggtgcaaattcaaagaccagt gataaactctcagaggagtgcttcttttgccagttttgccacaaagatttgtcaaagttaaattccacccggaaaacgca gcatcttaacaattgtatggataaagcgcagagagaaagtaaagaaaaaagtaattctacaaacaagaagaaaccagaaa ttcttgaatgtccaatttgtggaaagaaactgaaaacagtgcaggcaaggagggtgcacatgaaaaaatgtgctgcaact tacaatgtaagcacagaacaagtaataaagttagcacaaaaacaggaggaagagaaaaacatcctggcagcactaaatga accaaatgaatctgagagaaagtttgaagaggacatgcagattgccatggcgatatcatcatcactggctgataccgggt tagaagttatacctcaggaatctggtccatccagaaagagaggcaaaaaagacaaaaagtttgaagaggacatgcagatt gccatggcgatatcatcatcactggctgataccgggttagaagttatacctcaggaatctggtccatctagaaagagagg caaaaaagacaaaaataaagcagacccaatattacttcttctatctgaccaacagaaacaagcacgtacagaaaacagtg tttcaagtcttctattatcccaggagaataaggataacagtccaatgaaggagcgggtacattacttgtcaaagagcaaa ttagcaatgcaagagactaagccaagtttgtggcagaaggggagcctccagcatggtgactctgaggataatgataagat tcggtattacgtaggctcactgatgcccccgctagagcctagcaccatggtgacaggaagtaaactacggaggatgtctc agataccaggcaggggcagacaatcgtctgtgtacacagaacaaggcaggatgctagtggataaaaaagatgatgattgg atgacaggtaaccatggtgatgatgcattgattgtatccactcagacagtggtagatctagcagagcttatggtggacga gacgagtcaaggggaccaaatcaaaaacaatggtgataatattgggggattctgtcaacagaaaatagacaaaattctga cttccgtttcaacaaaagccacagacttgttgaagaaacactatgcctgccttctacacaatccagagcatagcgatgtc agtatagtaaccagggatggctctttacagacccataaagtcatactgtacgccaggtgtcctgtattgtacaagtgtac acatgaatatttcagactgaagctagaagaacttactgaggcttgtgacacattgatgctgtcgggagctgaagtacaga gtgattctgatgaggaagatgagaaattaaaggaaattaggaacgtagataatgtgtttagtgatgatagtgagaaagaa aggaccagagcagaggaagaacttataacagaggcagatgaaatatctgacgatgattactttgatattatgttaactca gagagaaaaactcagaaaactaagcaaacagagtgatcatgggaaagatggaaaagtaagtcatgatggagtggggagga gtgtaagcaggtataatataggagatgttacacaaagggagatctctctgttcttcaggaacgggttgaactcggagtca tcgtcagatgaagatgttagtgaggcaaaaagacataaatcagatcatcctgacgtagacggttctcagtacttgttgaa gtcgagtgagagacgggaagagaatgatgatttacatctttgtatgaattcaatgggaccttctagtagccaagtgctag atattgaaaaattgaaaagtgattgtgaacctcgtctttcacctaataagagtcaaggaactggtaatactggaataaaa agtgataaaccttgtgaccttttaacaacagaaacagcaactgcaaatatgtattcagatataattgaaattggatcatc tggggatagcaattcactggatggaatcactataccagcagaaactgaaatgaatttatctgggaattgtcaggaaaaca tttcgcagcagaggaaatctattgaaggaaatatgtccttcgttgaacatactaattacaaatctccaacatcaaaaggc agagatctaaagtcaccagacatggaaatggacctatctggagcggatctgtttggaagtccctcaccagctgcctcctc aaatagatccagtcctgtagtattccctgaaagggaggatgctgaactaactcattataaacatttaggagagaattcca accaaactcctcataaacagcgtagaaaggaacttgacctaactcctcataaacatttaagagaagttactgttctaact ccgaaaaaactttgcacagagaattccaacatacatgtacatgtaactcctcataaacagtttaatgacgattcgaacat aactcttcataaacagtgcagagattccaatcctagtagtccagaccaagtgatggaaattttaagttctccagaacatg ttaatgaagtacaagattatcctgattgtggtccagctacctcaccggaaaaggaagacgtagttagtgacagaatgagt tgttcaattgataacagaaaatatagtggtacttatatttttaagaggaatgcaaacatggttaatgatgattctaatga tgaagattaccgtgacacagaaacggaccgtaaaaactgtgatattgacccctgtgataattctgtaaagccaagtgata atatttctcgtgtaattaatgagcatgtaactaattcaccgaaaaaattaattgccaatacatcaccaaagttcaaacca agacaaggaaaacgctttcgttttcagaggaaagttttaagagttccaaaagatgatgatgatgaagatgatgatgatga ggcgtattgtagccagatagttgacaaaccatttattcaggattctgaaaaaggtcaaaaagttacatccaaaggaaaag gtcgagcttctgcaggtaaattatctatgtcaccagtgtatcagccatctacatccagagaacaggaaggaggggatggg gaggggatacatcctacagatttaacaatgtcaccagtctatcatcagcctaattcatcatgtccagagaatggtgtgag gacgggtcctacagagtcgggggagatgtcacccttggaggaggatgtatgggaggattttgaggatgatggtgggatgg gagatgtggtaattatggactctccagagaggaatgcaggctcttcaacagagacaccaaggtatacggttatacgatca gaagagaatattaacgatgtaagtgatttaccagatatcccagaagctcacggtgtggaggaattctctgacagttttgt tgtacctgataatgataacattaatatagacaaacaggaaagctcctcagatgtcaagaaggatttcaaaactccagtgt ctataggaggagggattcataaaggacaaaggacacagaaagatcccagtaaagtatggatgcctccctctccattcaca cccatgccagattatgataaaatggctactcccatccttaagagagaagttcagcgttatggagtaaagccaatacccaa gaaaaagatgatagtggtactgaaggacatctatcaaaagatgcatgaatatgagacggatagtgaattggaaatatcta aaggtagtatagatgacgacgataatgatgatgtaggaaaaatagatgataagcgtacaggagacgattctgaagatgaa gatataaactgtagtcaggaatcatctaactcttgtactagacttttcttggttgttgttgcagatgatgaactgatgaa cagagatgcaagtcatacatttatgccgccgccaaaaggagatctgaaagagaaattcagagaatttatagagaaaagaa atgacattcatgacaggatacttatgtatgagcctctggagttggattggctgaagaaagaactgaccgatgcaggagta aagacctctatggataaactgatgaattttcttgatgaaaagtgcataacatttactatgaagaacagaagaaataacag cccaaggaaaagaagaggaagaaaaaagaaggaagaatctacaaataaatga |
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Protein
| Protein ID | pfu_aug2.0_86.1_20193.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_86.1_20193.t1 MDKRKRTKLTLQKKGKQSDAATLTSAICSIPDVLNETSEFQVPVSSVPLRQQNRKVKLVKKDNIPPKGSAVKEIEPRDDE ASKSANDNENGILYDKAGTSISIKNEGSTSLTEKTDEEGKCPLCSVTINKAQLHSHFQQCLQEKFKHTSSLDFGANSKTS DKLSEECFFCQFCHKDLSKLNSTRKTQHLNNCMDKAQRESKEKSNSTNKKKPEILECPICGKKLKTVQARRVHMKKCAAT YNVSTEQVIKLAQKQEEEKNILAALNEPNESERKFEEDMQIAMAISSSLADTGLEVIPQESGPSRKRGKKDKKFEEDMQI AMAISSSLADTGLEVIPQESGPSRKRGKKDKNKADPILLLLSDQQKQARTENSVSSLLLSQENKDNSPMKERVHYLSKSK LAMQETKPSLWQKGSLQHGDSEDNDKIRYYVGSLMPPLEPSTMVTGSKLRRMSQIPGRGRQSSVYTEQGRMLVDKKDDDW MTGNHGDDALIVSTQTVVDLAELMVDETSQGDQIKNNGDNIGGFCQQKIDKILTSVSTKATDLLKKHYACLLHNPEHSDV SIVTRDGSLQTHKVILYARCPVLYKCTHEYFRLKLEELTEACDTLMLSGAEVQSDSDEEDEKLKEIRNVDNVFSDDSEKE RTRAEEELITEADEISDDDYFDIMLTQREKLRKLSKQSDHGKDGKVSHDGVGRSVSRYNIGDVTQREISLFFRNGLNSES SSDEDVSEAKRHKSDHPDVDGSQYLLKSSERREENDDLHLCMNSMGPSSSQVLDIEKLKSDCEPRLSPNKSQGTGNTGIK SDKPCDLLTTETATANMYSDIIEIGSSGDSNSLDGITIPAETEMNLSGNCQENISQQRKSIEGNMSFVEHTNYKSPTSKG RDLKSPDMEMDLSGADLFGSPSPAASSNRSSPVVFPEREDAELTHYKHLGENSNQTPHKQRRKELDLTPHKHLREVTVLT PKKLCTENSNIHVHVTPHKQFNDDSNITLHKQCRDSNPSSPDQVMEILSSPEHVNEVQDYPDCGPATSPEKEDVVSDRMS CSIDNRKYSGTYIFKRNANMVNDDSNDEDYRDTETDRKNCDIDPCDNSVKPSDNISRVINEHVTNSPKKLIANTSPKFKP RQGKRFRFQRKVLRVPKDDDDEDDDDEAYCSQIVDKPFIQDSEKGQKVTSKGKGRASAGKLSMSPVYQPSTSREQEGGDG EGIHPTDLTMSPVYHQPNSSCPENGVRTGPTESGEMSPLEEDVWEDFEDDGGMGDVVIMDSPERNAGSSTETPRYTVIRS EENINDVSDLPDIPEAHGVEEFSDSFVVPDNDNINIDKQESSSDVKKDFKTPVSIGGGIHKGQRTQKDPSKVWMPPSPFT PMPDYDKMATPILKREVQRYGVKPIPKKKMIVVLKDIYQKMHEYETDSELEISKGSIDDDDNDDVGKIDDKRTGDDSEDE DINCSQESSNSCTRLFLVVVADDELMNRDASHTFMPPPKGDLKEKFREFIEKRNDIHDRILMYEPLELDWLKKELTDAGV KTSMDKLMNFLDEKCITFTMKNRRNNSPRKRRGRKKKEESTNK |
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