Gene
Gene Model ID | pfu_aug2.0_86.1_20200 |
---|---|
Locus | scaffold86.1 : 419670 ... 430956 : + |
To GenomeBrowser | scaffold86.1:419670..430956 |
Genes list of scaffold | scaffold86.1 |
Synonym | pfu_aug1.0_56582.1_05599 |
Manual annotation
Annotation by Blast2GO
Annotation | GO |
---|---|
protein ssxt isoform x3 | GO:0000226 GO:0000902 GO:0005881 GO:0030374 GO:0035556 GO:0042493 GO:0045944 GO:0048013 GO:0071564 GO:0097150 |
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_86.1_20200.t1 | 1 | 1 | SSXT | 15 | 68 | 1.2e-29 | 101.6 | 1.9e-33 | 2.8e-29 | 100.4 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_86.1_20200.t1 | gi|260805608|ref|XP_002597678.1| | hypothetical protein BRAFLDRAFT_77420 [Branchiostoma floridae] | 3.0e-26 |
pfu_aug2.0_86.1_20200.t1 | gi|390370132|ref|XP_001199313.2| | PREDICTED: basic salivary proline-rich protein 1 isoform X1 [Strongylocentrotus purpuratus] | 5.0e-25 |
pfu_aug2.0_86.1_20200.t1 | gi|617423819|ref|XP_007559435.1| | PREDICTED: protein SSXT isoform X3 [Poecilia formosa] | 5.0e-24 |
pfu_aug2.0_86.1_20200.t1 | gi|617423816|ref|XP_007559434.1| | PREDICTED: protein SSXT isoform X2 [Poecilia formosa] | 6.0e-24 |
pfu_aug2.0_86.1_20200.t1 | gi|617423813|ref|XP_007559433.1| | PREDICTED: protein SSXT isoform X1 [Poecilia formosa] | 9.0e-24 |
Transcript
Transcript ID | pfu_aug2.0_86.1_20200.t1 |
---|---|
Definition | - |
>pfu_aug2.0_86.1_20200.t1 atgtcgcttgcatttgttcaacagtcacagaaaaagggtgtgccaacacaggcctccatacagaagatgttggatgagaa caaccagtttatacagaccatagtggattatcagaataaagggaaggctgccgaatgtgcacaatttcaacagatgcttc atcgtaatttggtttatctggcaacattggccgactctaatctactccctgcgttgaaccaaggaggcatgggacagcag cagaacccccagatgggccagatgagaacccctggtgccatgaatcctatgtcacaaggtcagggttctggaatgggcac tcaagggtacaacatgcagcaacaaggaaatttcaacaaccaacaacctgggaatcaagggatgatgcaacctcagcaac ctatgatgtcacaacaaggtatgatgccacaacaacagcaaccaatgatgtcccagcaacaaggcatgatgccacagcaa caacccatgatgtcccagcaacagccgatgtctcagcagcaacctatgatgtcacagcaaggtatgatgccacaacaaca gcaaccgatgatgtcacagcaacaaccgatgatgtcacagcaacaacccatgatgtcacaacagcagggcatgatgccgc agcagaatccgtctatgtcacagccaggacagatgatgccgtctccggggtccggaatgtcggggcagggtaacatggga cagggaggtcaaatgatgaacagacaacctaacccacaggggatgtatagacaaggtcagcctggacaatatggacagca ctatggaaatcagcaacagtaccaaggaggtcaaggtcaacagaacttcccacaaggtcaaggctacaatcaaaatcagt ttaattatcaaggacagaaccaaggccagcagaggttccatccgtacagaggtcagccaaacagtggaggtcaacctaac cagatgggaggtcagatgatgcagggtcaaggacagatgcaaggtcaaggtcagatgggcaatcctaattcaggaatgat gccaaatcaaggttcaaatcaaatgatgaatgttcaaggatccatgccatctcaaaatcaaggaggttcacaaggtcaag ggcagcagatgcagcagccaaatcagatgtcaggtcaaggtcagatgcaacctcaaggtcaaatgccggtgaatggaggg caaggtgctaacatgcagaatcagaattcaaatggaggtcaaaacattatgatgggccagatgcagaatcagcaatcaat gggaaatccatctggtggtcaaggtcaaatgcctaatcaaggtcaaatgcctaaccaaggtcaaatgcctaatcaaggtc aaatgcctaatcaaggtcaaatgccaaaccaaggtcaaatgcctaatcagcactcgatgggaggtggaatgccaaatcag caatcgatgggaagtcctatgcccaatcagaataacatgccaaatatgccaggtcaaggtcaaatgccagtccaaggtca aggtaactttggctataataacagaaggtga |
Protein
Protein ID | pfu_aug2.0_86.1_20200.t1 |
---|---|
Definition | - |
>pfu_aug2.0_86.1_20200.t1 MSLAFVQQSQKKGVPTQASIQKMLDENNQFIQTIVDYQNKGKAAECAQFQQMLHRNLVYLATLADSNLLPALNQGGMGQQ QNPQMGQMRTPGAMNPMSQGQGSGMGTQGYNMQQQGNFNNQQPGNQGMMQPQQPMMSQQGMMPQQQQPMMSQQQGMMPQQ QPMMSQQQPMSQQQPMMSQQGMMPQQQQPMMSQQQPMMSQQQPMMSQQQGMMPQQNPSMSQPGQMMPSPGSGMSGQGNMG QGGQMMNRQPNPQGMYRQGQPGQYGQHYGNQQQYQGGQGQQNFPQGQGYNQNQFNYQGQNQGQQRFHPYRGQPNSGGQPN QMGGQMMQGQGQMQGQGQMGNPNSGMMPNQGSNQMMNVQGSMPSQNQGGSQGQGQQMQQPNQMSGQGQMQPQGQMPVNGG QGANMQNQNSNGGQNIMMGQMQNQQSMGNPSGGQGQMPNQGQMPNQGQMPNQGQMPNQGQMPNQGQMPNQHSMGGGMPNQ QSMGSPMPNQNNMPNMPGQGQMPVQGQGNFGYNNRR |