Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_86.1_20200
Locus scaffold86.1 : 419670 ... 430956 : +
To GenomeBrowser scaffold86.1:419670..430956
Genes list of scaffold scaffold86.1
Synonym pfu_aug1.0_56582.1_05599

Manual annotation
Annotation by Blast2GO
Annotation GO
protein ssxt isoform x3 GO:0000226 GO:0000902 GO:0005881 GO:0030374 GO:0035556 GO:0042493 GO:0045944 GO:0048013 GO:0071564 GO:0097150

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_86.1_20200.t1 1 1 SSXT 15 68 1.2e-29 101.6 1.9e-33 2.8e-29 100.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_86.1_20200.t1 gi|260805608|ref|XP_002597678.1| hypothetical protein BRAFLDRAFT_77420 [Branchiostoma floridae] 3.0e-26
pfu_aug2.0_86.1_20200.t1 gi|390370132|ref|XP_001199313.2| PREDICTED: basic salivary proline-rich protein 1 isoform X1 [Strongylocentrotus purpuratus] 5.0e-25
pfu_aug2.0_86.1_20200.t1 gi|617423819|ref|XP_007559435.1| PREDICTED: protein SSXT isoform X3 [Poecilia formosa] 5.0e-24
pfu_aug2.0_86.1_20200.t1 gi|617423816|ref|XP_007559434.1| PREDICTED: protein SSXT isoform X2 [Poecilia formosa] 6.0e-24
pfu_aug2.0_86.1_20200.t1 gi|617423813|ref|XP_007559433.1| PREDICTED: protein SSXT isoform X1 [Poecilia formosa] 9.0e-24

Transcript
Transcript IDpfu_aug2.0_86.1_20200.t1
Definition-
>pfu_aug2.0_86.1_20200.t1
atgtcgcttgcatttgttcaacagtcacagaaaaagggtgtgccaacacaggcctccatacagaagatgttggatgagaa
caaccagtttatacagaccatagtggattatcagaataaagggaaggctgccgaatgtgcacaatttcaacagatgcttc
atcgtaatttggtttatctggcaacattggccgactctaatctactccctgcgttgaaccaaggaggcatgggacagcag
cagaacccccagatgggccagatgagaacccctggtgccatgaatcctatgtcacaaggtcagggttctggaatgggcac
tcaagggtacaacatgcagcaacaaggaaatttcaacaaccaacaacctgggaatcaagggatgatgcaacctcagcaac
ctatgatgtcacaacaaggtatgatgccacaacaacagcaaccaatgatgtcccagcaacaaggcatgatgccacagcaa
caacccatgatgtcccagcaacagccgatgtctcagcagcaacctatgatgtcacagcaaggtatgatgccacaacaaca
gcaaccgatgatgtcacagcaacaaccgatgatgtcacagcaacaacccatgatgtcacaacagcagggcatgatgccgc
agcagaatccgtctatgtcacagccaggacagatgatgccgtctccggggtccggaatgtcggggcagggtaacatggga
cagggaggtcaaatgatgaacagacaacctaacccacaggggatgtatagacaaggtcagcctggacaatatggacagca
ctatggaaatcagcaacagtaccaaggaggtcaaggtcaacagaacttcccacaaggtcaaggctacaatcaaaatcagt
ttaattatcaaggacagaaccaaggccagcagaggttccatccgtacagaggtcagccaaacagtggaggtcaacctaac
cagatgggaggtcagatgatgcagggtcaaggacagatgcaaggtcaaggtcagatgggcaatcctaattcaggaatgat
gccaaatcaaggttcaaatcaaatgatgaatgttcaaggatccatgccatctcaaaatcaaggaggttcacaaggtcaag
ggcagcagatgcagcagccaaatcagatgtcaggtcaaggtcagatgcaacctcaaggtcaaatgccggtgaatggaggg
caaggtgctaacatgcagaatcagaattcaaatggaggtcaaaacattatgatgggccagatgcagaatcagcaatcaat
gggaaatccatctggtggtcaaggtcaaatgcctaatcaaggtcaaatgcctaaccaaggtcaaatgcctaatcaaggtc
aaatgcctaatcaaggtcaaatgccaaaccaaggtcaaatgcctaatcagcactcgatgggaggtggaatgccaaatcag
caatcgatgggaagtcctatgcccaatcagaataacatgccaaatatgccaggtcaaggtcaaatgccagtccaaggtca
aggtaactttggctataataacagaaggtga

Protein
Protein IDpfu_aug2.0_86.1_20200.t1
Definition-
>pfu_aug2.0_86.1_20200.t1
MSLAFVQQSQKKGVPTQASIQKMLDENNQFIQTIVDYQNKGKAAECAQFQQMLHRNLVYLATLADSNLLPALNQGGMGQQ
QNPQMGQMRTPGAMNPMSQGQGSGMGTQGYNMQQQGNFNNQQPGNQGMMQPQQPMMSQQGMMPQQQQPMMSQQQGMMPQQ
QPMMSQQQPMSQQQPMMSQQGMMPQQQQPMMSQQQPMMSQQQPMMSQQQGMMPQQNPSMSQPGQMMPSPGSGMSGQGNMG
QGGQMMNRQPNPQGMYRQGQPGQYGQHYGNQQQYQGGQGQQNFPQGQGYNQNQFNYQGQNQGQQRFHPYRGQPNSGGQPN
QMGGQMMQGQGQMQGQGQMGNPNSGMMPNQGSNQMMNVQGSMPSQNQGGSQGQGQQMQQPNQMSGQGQMQPQGQMPVNGG
QGANMQNQNSNGGQNIMMGQMQNQQSMGNPSGGQGQMPNQGQMPNQGQMPNQGQMPNQGQMPNQGQMPNQHSMGGGMPNQ
QSMGSPMPNQNNMPNMPGQGQMPVQGQGNFGYNNRR

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495