Gene
| Gene Model ID | pfu_aug2.0_86.1_20202 |
|---|---|
| Locus | scaffold86.1 : 437349 ... 447254 : + |
| To GenomeBrowser | scaffold86.1:437349..447254 |
| Genes list of scaffold | scaffold86.1 |
| Synonym | pfu_aug1.0_9149.1_17432 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_86.1_20202.t1 | 2 | 1 | NOB1_Zn_bind | 147 | 155 | 2.0e-27 | 94.8 | 6.0 | 15000.0 | -4.2 |
| pfu_aug2.0_86.1_20202.t1 | 2 | 1 | AF1Q | 183 | 200 | 1.3e-07 | 31.4 | 6.0 | 15000.0 | -5.4 |
| pfu_aug2.0_86.1_20202.t1 | 2 | 2 | AF1Q | 243 | 277 | 1.3e-07 | 31.4 | 5.1e-11 | 1.3e-07 | 31.4 |
| pfu_aug2.0_86.1_20202.t1 | 2 | 2 | NOB1_Zn_bind | 319 | 390 | 2.0e-27 | 94.8 | 8.0e-31 | 2.0e-27 | 94.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_86.1_20202.t1 | gi|676494788|ref|XP_009066678.1| | hypothetical protein LOTGIDRAFT_211535 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_86.1_20202.t1 | gi|641798573|ref|XP_008162390.1| | PREDICTED: RNA-binding protein NOB1 isoform X1 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_86.1_20202.t1 | gi|148234435|ref|NP_001082748.1| | NIN1/RPN12 binding protein 1 homolog [Xenopus laevis] | 0.0 |
| pfu_aug2.0_86.1_20202.t1 | gi|54035096|gb|AAH84069.1| | LOC398701 protein [Xenopus laevis] | 0.0 |
| pfu_aug2.0_86.1_20202.t1 | gi|551527862|ref|XP_005815402.1| | PREDICTED: RNA-binding protein NOB1-like [Xiphophorus maculatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_86.1_20202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_86.1_20202.t1 atggattccaacacgatggtgaaacatgtggtggcagattcgggggcatttatcaggaatgctccattaaatagcatagg agtaaatatctacgtagtgccggaggtgataagtgagatccgagacaaagccacgagacagaggctagaggttctaccgt acaaactcatccctaaaacaccagctacagaaaacatcaagatagttactgagtttgccaaaaagactggagattacaga agtctgtcggcagtggacatgagagtgctggctctaacgtaccaattagaaaaggaaaacatgggaactgaacatatcaa aaccaacccaaacaaacagattgaatggaatacaactcgtcaaatgttggagaaagctactgatattgcgggattctatt tggcaaaaaaaaatccaagcagatcaacttccgaacgaacttcaacatcagaattctgtgattctactgaaaacgataaa gaagaattgtcaagtggaccagatggttctaattgtaaacatgatcaacaaaatcacaatatggaaaatgtaagtacgca aagtgaaacggacatcaaagcaagtgacaagtcagatacacttaatgaagaaaatgtaaaggacgagtcgagtaatagag gcgatataaaattgtcatcaagtgaagatgtcattggtggtctgtccagagagggggccgtattaccctctcatctaata catctagaagaagaggaggaggatgaggggatagaggaagatgacgatgatgatgatgatgatgatgatgagggatggat cacccccagtaatatacagtcagtcaagaagagtatgggcgacatacagatggagaaagcttccgtgacggtgggatgtg tcactacggattttgctatgcagaatgtgctgttacagatgggattaaatgtgatatccatagatggaatgttgataaag aaggcaaagagctttgttcagagatgttttgcctgtatgaaagtaactacaaacatgatgatagagttctgtccccattg tggaaataatacgttgcagaaggtctctatgtcactcgacgatgacggcaaaatacagtgcttcctgtctcggaggaagc caatgaacacacgggggatgaagtactccttacctatgccaaagggaggtaaacatgccaagaatcccgtccttgtagct gatcagccgttacctcagcagagagtgtccaaaaagtcccgtcagaagatggacgtgttagatattgattacgttgccag tcaatctccgtttagtgtaagggacataactagccgggctgcacagctcggtattcgaagcaaaaatcaattcaacaggc gtaatccaaatgagaatcgtaaaaaaagtggaaaaaagaaataa |
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Protein
| Protein ID | pfu_aug2.0_86.1_20202.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_86.1_20202.t1 MDSNTMVKHVVADSGAFIRNAPLNSIGVNIYVVPEVISEIRDKATRQRLEVLPYKLIPKTPATENIKIVTEFAKKTGDYR SLSAVDMRVLALTYQLEKENMGTEHIKTNPNKQIEWNTTRQMLEKATDIAGFYLAKKNPSRSTSERTSTSEFCDSTENDK EELSSGPDGSNCKHDQQNHNMENVSTQSETDIKASDKSDTLNEENVKDESSNRGDIKLSSSEDVIGGLSREGAVLPSHLI HLEEEEEDEGIEEDDDDDDDDDDEGWITPSNIQSVKKSMGDIQMEKASVTVGCVTTDFAMQNVLLQMGLNVISIDGMLIK KAKSFVQRCFACMKVTTNMMIEFCPHCGNNTLQKVSMSLDDDGKIQCFLSRRKPMNTRGMKYSLPMPKGGKHAKNPVLVA DQPLPQQRVSKKSRQKMDVLDIDYVASQSPFSVRDITSRAAQLGIRSKNQFNRRNPNENRKKSGKKK |
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