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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_860.1_01202
Locus scaffold860.1 : 119625 ... 130815 : -
To GenomeBrowser scaffold860.1:119625..130815
Genes list of scaffold scaffold860.1
Synonym pfu_aug1.0_13336.1_10593

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_860.1_01202.t1 2 1 Galactosyl_T 33 59 6.3e-09 35.7 0.049 360.0 0.6
pfu_aug2.0_860.1_01202.t1 2 2 Galactosyl_T 92 143 6.3e-09 35.7 5.9e-12 4.4e-08 32.9

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_860.1_01202.t1 gi|736244330|ref|XP_010785955.1| PREDICTED: UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2-like [Notothenia coriiceps] 5.0e-07
pfu_aug2.0_860.1_01202.t1 gi|542236744|ref|XP_005456256.1| PREDICTED: putative UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase LOC402377-like [Oreochromis niloticus] 7.0e-07

Transcript
Transcript IDpfu_aug2.0_860.1_01202.t1
Definition-
>pfu_aug2.0_860.1_01202.t1
atgcgatgtgacagattcaagataagaatcaagggtcctctagacatccgtaagatccgcctggtttctattgttatatt
actggtgataacatggacatatcttttcactgtgaacataacacaaactctaacacagagacaagttcgaaggacacact
acaataatgatgaaattaccttcaatataaatgagaaaagtatttgtgatggaagcaggaatagtgatttagaaattctt
gttgccatagtttcgagttttgatgaatactggcagagagattacatccgggcaacatggggaaacgatgccaagaaaag
tccgaaaatgaggatattgtttatcgtggggacttctgttgaggacagccctgataccccctccatccaggaagaaagtt
ataaatttggagatatcgttcaagatgcatatgcgtgtgaagcttataatatccatatctatgtgctcaatgtgttctat
aaatag

Protein
Protein IDpfu_aug2.0_860.1_01202.t1
Definition-
>pfu_aug2.0_860.1_01202.t1
MRCDRFKIRIKGPLDIRKIRLVSIVILLVITWTYLFTVNITQTLTQRQVRRTHYNNDEITFNINEKSICDGSRNSDLEIL
VAIVSSFDEYWQRDYIRATWGNDAKKSPKMRILFIVGTSVEDSPDTPSIQEESYKFGDIVQDAYACEAYNIHIYVLNVFY
K

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