Gene
| Gene Model ID | pfu_aug2.0_866.1_21226 |
|---|---|
| Locus | scaffold866.1 : 69591 ... 79895 : - |
| To GenomeBrowser | scaffold866.1:69591..79895 |
| Genes list of scaffold | scaffold866.1 |
| Synonym | pfu_aug1.0_1209.1_65893 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_866.1_21226.t1 | 2 | 1 | Nop25 | 8 | 81 | 1.6e-10 | 41.1 | 1.1e-14 | 1.6e-10 | 41.1 |
| pfu_aug2.0_866.1_21226.t1 | 2 | 2 | Nop25 | 144 | 194 | 1.6e-10 | 41.1 | 0.27 | 4000.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_866.1_21226.t1 | gi|676488279|ref|XP_009064565.1| | hypothetical protein LOTGIDRAFT_236121, partial [Lottia gigantea] | 3.0e-27 |
| pfu_aug2.0_866.1_21226.t1 | gi|524888243|ref|XP_005100697.1| | PREDICTED: nucleolar protein 12-like [Aplysia californica] | 5.0e-24 |
| pfu_aug2.0_866.1_21226.t1 | gi|507658219|ref|XP_004634654.1| | PREDICTED: nucleolar protein 12 [Octodon degus] | 6.0e-14 |
| pfu_aug2.0_866.1_21226.t1 | gi|533128272|ref|XP_005379279.1| | PREDICTED: nucleolar protein 12 isoform X2 [Chinchilla lanigera] | 6.0e-14 |
| pfu_aug2.0_866.1_21226.t1 | gi|640817378|ref|XP_008065525.1| | PREDICTED: nucleolar protein 12 [Tarsius syrichta] | 1.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_866.1_21226.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_866.1_21226.t1 atgagcgaaacgaagaaacgaaaatcaaaaaagaacagacaaacaaagaaatttttggtgtttgatgaacaagctcgaat ggaatatttaaccggatttagaaagaggcgcaaagaaagacaacaaaaagcaaaagaggaaaaagagctacagatgaaaa gagataagaaagaattaaagaatcagaggagagaactattaaagagaagtcaggattacaaagggaagaagaggaaggat ttacctgccatagatctagaagatgcaacagagcccactgtgcttgacttgcccgatcatacagtcactataacggatat atcagaaattgacttggcaggtcacaatgggcttaggttaggacagaatcaggcagccatagaaaaagatgaggatgaag gtaatttgggctcaggaaataaagcagtctctaaagatgaactcaaaaagtccctcaaacaactcaaaagaaaacagagc aatctcgactccagtcaacatccaagcaagaagaaattcagccatcataaacagcacaaacagtatgataaaaagacatt gatcaaaagacgcaaagacaaaaagacatatttacatcaaaagaagagaatgaaatgtaatacttaa |
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Protein
| Protein ID | pfu_aug2.0_866.1_21226.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_866.1_21226.t1 MSETKKRKSKKNRQTKKFLVFDEQARMEYLTGFRKRRKERQQKAKEEKELQMKRDKKELKNQRRELLKRSQDYKGKKRKD LPAIDLEDATEPTVLDLPDHTVTITDISEIDLAGHNGLRLGQNQAAIEKDEDEGNLGSGNKAVSKDELKKSLKQLKRKQS NLDSSQHPSKKKFSHHKQHKQYDKKTLIKRRKDKKTYLHQKKRMKCNT |
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