Gene
| Gene Model ID | pfu_aug2.0_87.1_23425 |
|---|---|
| Locus | scaffold87.1 : 442057 ... 466894 : - |
| To GenomeBrowser | scaffold87.1:442057..466894 |
| Genes list of scaffold | scaffold87.1 |
| Synonym | pfu_aug1.0_14726.1_46797 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_87.1_23425.t1 | 1 | 1 | Ndc80_HEC | 98 | 238 | 0.0 | 168.2 | 0.0 | 0.0 | 166.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_87.1_23425.t1 | gi|291226968|ref|XP_002733464.1| | PREDICTED: kinetochore protein NDC80 homolog, partial [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_87.1_23425.t1 | gi|390334279|ref|XP_003723890.1| | PREDICTED: kinetochore protein NDC80 homolog [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_87.1_23425.t1 | gi|260818218|ref|XP_002604280.1| | hypothetical protein BRAFLDRAFT_125246 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_87.1_23425.t1 | gi|390352396|ref|XP_003727891.1| | 0.0 | |
| pfu_aug2.0_87.1_23425.t1 | gi|676437054|ref|XP_009048079.1| | hypothetical protein LOTGIDRAFT_230707 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_87.1_23425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_87.1_23425.t1 atgaagaaatcctttgatggccgatcacggtctgtggacaggtcatcgggaccacagcaatttggcagtactcagaaaag aacgtcatctatcgatcgtctctccatatatggcagacagtccaccagtggtaggcaggtagttgcaccgttacgcattc gaaacgaaggcaatcatcatccaaacactaaagcaagcactacgcgtgcttcgtatgacagcagagggtctttcggatgg aaggggtcctctgcagcttctggcatgggctcacgtaagacccctcagaaaaacagcaggtccagtttctacagtcgaca gagttctgccggcttgtcctctcacaatggtatacctaaagatcccagaaaactacacgatcgaggagtgcagcaaaaat ttattacaaatgtgtatgagtttttaacagaacatggatacagtcatcagattactcctaaaatacttgcatctcctaca actaaagacttccttaagatatttgagttcatatatggacaattcgagccaaagttcaaactagggaagaaaccggagga ggacgtaccagttctgctgaaatcgttacgttacccgttcttgatatccaagtcctccatatttgctgtcggtacttctc acacctggccttcagtattggctgccttggactggatggttaatctcatacagtttcagaaaaatgtgtgtgtggatgat gtaattttcttgagtaatgatggggtctttgacgagatacctgaatctaggattcagtttgattatacagagaaaaccta cgaggcttttctagacggacacgatacctttgaagaacatgatgctaaattagcacagacactcagtttggaacatgaag aaatccattcaaaaattcaacaaatgcagcagatttatgagacccaagaactgacaccagccgatataaacagaataaac ttggaaaggcaagagctgaggcggaagaaagaatgcgcggagaaacagatagccgaacatgaggaagagatgtggaatta cgagaaagagatggccagatttctggagagggttgagaacaagtgcagtgaatacaacaaaaaggggagaaaactaaacc ttatccctagcacagcagaaaacgcctttggtgtagactacgaacttagttcttcatcaggcagctatcagtccactacc aagtttaaggacacaattaagcctgccctttttgaacttaaaaaaagaattggtgaaagcatacagcagaaagagataga gaaaatagagagcatgaattattgtgataacgttgatgagcacaatgacgagttaaggacggatattgaaatggatgtag ccaagatgaaaaggatggatgaagagtatgacgcaaaaaaacagatgtgtcaaagagaataccaaaagagtcaagagacg atagacttcttacagaagagaatatgggaattccgaggagcaagtcagcaatcagtggcagaaatggagaatgatctatg ggaaacagccgaaatgggtagacagaagcttgatcagaaagttcaagagagaaagcagtatgatcagttcttagatgctg tcaataaatctgtagttgaccacagaattgcccttagtattcacattgaaaagatgtacaatgaaagcaaagaagactta gaaaagctagaaaaagaaagtggaaaactacagaaatcgtag |
|
Protein
| Protein ID | pfu_aug2.0_87.1_23425.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_87.1_23425.t1 MKKSFDGRSRSVDRSSGPQQFGSTQKRTSSIDRLSIYGRQSTSGRQVVAPLRIRNEGNHHPNTKASTTRASYDSRGSFGW KGSSAASGMGSRKTPQKNSRSSFYSRQSSAGLSSHNGIPKDPRKLHDRGVQQKFITNVYEFLTEHGYSHQITPKILASPT TKDFLKIFEFIYGQFEPKFKLGKKPEEDVPVLLKSLRYPFLISKSSIFAVGTSHTWPSVLAALDWMVNLIQFQKNVCVDD VIFLSNDGVFDEIPESRIQFDYTEKTYEAFLDGHDTFEEHDAKLAQTLSLEHEEIHSKIQQMQQIYETQELTPADINRIN LERQELRRKKECAEKQIAEHEEEMWNYEKEMARFLERVENKCSEYNKKGRKLNLIPSTAENAFGVDYELSSSSGSYQSTT KFKDTIKPALFELKKRIGESIQQKEIEKIESMNYCDNVDEHNDELRTDIEMDVAKMKRMDEEYDAKKQMCQREYQKSQET IDFLQKRIWEFRGASQQSVAEMENDLWETAEMGRQKLDQKVQERKQYDQFLDAVNKSVVDHRIALSIHIEKMYNESKEDL EKLEKESGKLQKS |
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