Gene
| Gene Model ID | pfu_aug2.0_8719.1_33018 |
|---|---|
| Locus | scaffold8719.1 : 1 ... 9268 : - |
| To GenomeBrowser | scaffold8719.1:1..9268 |
| Genes list of scaffold | scaffold8719.1 |
| Synonym | pfu_aug1.0_35075.1_48180 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_8719.1_33018.t1 | 2 | 1 | ubiquitin | 1 | 58 | 1.2e-29 | 101.5 | 1.4e-32 | 2.4e-29 | 100.5 |
| pfu_aug2.0_8719.1_33018.t1 | 2 | 1 | Rad60-SLD | 1 | 55 | 4.0e-14 | 52.0 | 2.7e-17 | 4.4e-14 | 51.9 |
| pfu_aug2.0_8719.1_33018.t1 | 2 | 1 | Ubiquitin_2 | 2 | 53 | 7.2e-06 | 26.1 | 2.7e-08 | 4.4e-05 | 23.6 |
| pfu_aug2.0_8719.1_33018.t1 | 2 | 2 | Rad60-SLD | 79 | 86 | 4.0e-14 | 52.0 | 2.5 | 4100.0 | -2.5 |
| pfu_aug2.0_8719.1_33018.t1 | 2 | 2 | Ubiquitin_2 | 81 | 95 | 7.2e-06 | 26.1 | 1.9 | 3100.0 | -1.6 |
| pfu_aug2.0_8719.1_33018.t1 | 1 | 1 | Ribosomal_S27 | 85 | 131 | 9.5e-29 | 98.9 | 1.0e-31 | 1.7e-28 | 98.1 |
| pfu_aug2.0_8719.1_33018.t1 | 2 | 2 | ubiquitin | 87 | 98 | 1.2e-29 | 101.5 | 2.9 | 4800.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_8719.1_33018.t1 | gi|385843206|gb|AFI80900.1| | 0.0 | |
| pfu_aug2.0_8719.1_33018.t1 | gi|291226770|ref|XP_002733357.1| | PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_8719.1_33018.t1 | gi|594675147|ref|XP_007185405.1| | PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Balaenoptera acutorostrata scammoni] | 0.0 |
| pfu_aug2.0_8719.1_33018.t1 | gi|532044768|ref|XP_005365195.1| | PREDICTED: ubiquitin-40S ribosomal protein S27a-like [Microtus ochrogaster] | 0.0 |
| pfu_aug2.0_8719.1_33018.t1 | gi|472354356|ref|XP_004396839.1| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_8719.1_33018.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8719.1_33018.t1 gttgagccaagtgatactattgaaaatgtaaaggccaaaatacaggacaaagaaggaatccctcccgaccagcagaggtt gatttttgccggcaagcagttagaagacggccgtaccttgtcggactacaatatccagaaagagtctaccttacacttgg tgttacgtcttagaggaggtgccaagaaaaggaagaagaagaactacacaaccccaaagaagaacaagcacaagaagaag aaggtcaagctggctgtactgaaatactacaaggttgatgagaatggcaagatcactcgcctgcgacgagagtgccctaa cgaggaatgtggagccggagtatttatggccgctcactttgacagacagtactgtggaaaatgctgtctaacctatgtat ttaacaagccagaagacaaataa |
|
Protein
| Protein ID | pfu_aug2.0_8719.1_33018.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_8719.1_33018.t1 VEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGAKKRKKKNYTTPKKNKHKKK KVKLAVLKYYKVDENGKITRLRRECPNEECGAGVFMAAHFDRQYCGKCCLTYVFNKPEDK |
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