Gene
| Gene Model ID | pfu_aug2.0_873.1_11262 |
|---|---|
| Locus | scaffold873.1 : 54815 ... 57075 : - |
| To GenomeBrowser | scaffold873.1:54815..57075 |
| Genes list of scaffold | scaffold873.1 |
| Synonym | pfu_aug1.0_18110.1_54462 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_873.1_11262.t1 | 3 | 1 | zf-B_box | 14 | 57 | 1.4e-13 | 50.4 | 5.4e-08 | 2.4e-05 | 24.1 |
| pfu_aug2.0_873.1_11262.t1 | 3 | 2 | zf-B_box | 75 | 112 | 1.4e-13 | 50.4 | 1.4e-11 | 6.3e-09 | 35.5 |
| pfu_aug2.0_873.1_11262.t1 | 3 | 1 | SGL | 338 | 436 | 1.6e-08 | 34.2 | 7.3e-05 | 0.033 | 13.5 |
| pfu_aug2.0_873.1_11262.t1 | 3 | 2 | SGL | 481 | 537 | 1.6e-08 | 34.2 | 2.9e-06 | 0.0013 | 18.1 |
| pfu_aug2.0_873.1_11262.t1 | 3 | 3 | zf-B_box | 506 | 520 | 1.4e-13 | 50.4 | 1.4 | 620.0 | 0.4 |
| pfu_aug2.0_873.1_11262.t1 | 3 | 3 | SGL | 544 | 558 | 1.6e-08 | 34.2 | 0.97 | 440.0 | 0.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_873.1_11262.t1 | gi|675865694|ref|XP_009018407.1| | hypothetical protein HELRODRAFT_191975 [Helobdella robusta] | 1.0e-18 |
| pfu_aug2.0_873.1_11262.t1 | gi|410968114|ref|XP_003990557.1| | PREDICTED: tripartite motif-containing protein 45 [Felis catus] | 5.0e-13 |
| pfu_aug2.0_873.1_11262.t1 | gi|591297217|ref|XP_007075732.1| | PREDICTED: tripartite motif-containing protein 45 [Panthera tigris altaica] | 5.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_873.1_11262.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_873.1_11262.t1 atgagtgaccaaggcgccacagcgttccctgttcaaacaatggtggaatgtggtatctgtggaggaacctttaacatcga ttggttctgtaagacatgtggtggatccctttgtgacacatgctatcaggctcaccggagagcgtccctcttcagaaacc atatagtggtgctacgaactgaggatgtcataaggtttcacggtccaacgaagatttccgaattttgcagaatacatccg acaaaagaaatatctacctactgcaatgattgcaatattccatgctgcgttttatgtatgactgaaaaacaccaacgtca tagcttctctccgatagaagacaaatatcttgctgcggagaggagtctacatcagtatgctatggaggtacgaacagacg taaaaccttgcctggatgccatgaaagaaagtctaaaacaacgtctagaaaaacttgataaacatattgaaaatgaaaag gacggaataaatgcatttcgacatactctcaaacagaaagttgatgaatcatgtgatctgcttttgaaagaacttgatca agcaaaacaagatttcagaaacattgaaaaagaactcgattctagtaaacaaaagttagatcagttgatgaaagatatag aaagtatgataggggagggaaaactcgatatcatagaataccccccacccatccgcacgtctctcatcccggactcccct ttgcctgttttgaaagtaccaaaatttttacctggcagcgatcttattggtttgatacaaaacaagatagggaaactaga atttcatgagcaaatctcggacaaaaaggagaataacgcatcctcaaatcctgcactagatatgaatatcagtaaacaga aacccctatctcaggtcaatggtattggcaaagctgatattagcgtaacgaaggtcaaatcgtttaaaagtgagatttgg gttacatctcttacctctgccgataaaaactcaacatgggttatgggttttgatagtaataccatgtatctgtatgatag taatggtgatgtggtcaggtcagttaaagtagagaacggtcaatgcatcaataatatggtcatcacaaggtcaggggata tgatagtggcttgtagggataacacagtaagacgtgtgtcagtaggtggtgaggtgtctacagtgatgaacacatggcca tttgaacctttcggtgtgtgtctgactgatgaggaggagattgtggtgtgtatggttgattggggccatgtggttgtgta ctctcctgatggacgtagtatgctacgtgagataaggggagtggacagtcagggtaaacaaaagatcacattgccttacc gtgtggtatgtaatggtaaggatctgtgtttggtgaattatggatgtaatgtagtgtgtgtggatgagggtgataacgtg aagtggctgtatgatggtaagcaggctaagcctaaggagaaattttatccacttggtatatgtgtagacaagtaccacaa cctgatggtaactgatttctgcaataaatgtgtacattatatagacagggagggagagttaatacaggttatactgatac ctgaacagacagggttagtgtgtccatatgggatctgtgtagatgatgagacaggtcaggtgtgggtggggaatggttat gatgatgatgtcgttatagcgaaatatttaatgtaa |
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Protein
| Protein ID | pfu_aug2.0_873.1_11262.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_873.1_11262.t1 MSDQGATAFPVQTMVECGICGGTFNIDWFCKTCGGSLCDTCYQAHRRASLFRNHIVVLRTEDVIRFHGPTKISEFCRIHP TKEISTYCNDCNIPCCVLCMTEKHQRHSFSPIEDKYLAAERSLHQYAMEVRTDVKPCLDAMKESLKQRLEKLDKHIENEK DGINAFRHTLKQKVDESCDLLLKELDQAKQDFRNIEKELDSSKQKLDQLMKDIESMIGEGKLDIIEYPPPIRTSLIPDSP LPVLKVPKFLPGSDLIGLIQNKIGKLEFHEQISDKKENNASSNPALDMNISKQKPLSQVNGIGKADISVTKVKSFKSEIW VTSLTSADKNSTWVMGFDSNTMYLYDSNGDVVRSVKVENGQCINNMVITRSGDMIVACRDNTVRRVSVGGEVSTVMNTWP FEPFGVCLTDEEEIVVCMVDWGHVVVYSPDGRSMLREIRGVDSQGKQKITLPYRVVCNGKDLCLVNYGCNVVCVDEGDNV KWLYDGKQAKPKEKFYPLGICVDKYHNLMVTDFCNKCVHYIDREGELIQVILIPEQTGLVCPYGICVDDETGQVWVGNGY DDDVVIAKYLM |
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