Gene
| Gene Model ID | pfu_aug2.0_875.1_17900 |
|---|---|
| Locus | scaffold875.1 : 140676 ... 152062 : + |
| To GenomeBrowser | scaffold875.1:140676..152062 |
| Genes list of scaffold | scaffold875.1 |
| Synonym | pfu_aug1.0_8320.1_02579 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_875.1_17900.t1 | 1 | 1 | PARP | 492 | 672 | 3.9e-24 | 85.2 | 4.8e-27 | 2.4e-23 | 82.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_875.1_17900.t1 | gi|641770260|ref|XP_008169370.1| | PREDICTED: poly [ADP-ribose] polymerase 12 [Chrysemys picta bellii] | 0.0 |
| pfu_aug2.0_875.1_17900.t1 | gi|426228105|ref|XP_004008155.1| | 0.0 | |
| pfu_aug2.0_875.1_17900.t1 | gi|591356080|ref|XP_007072342.1| | PREDICTED: poly [ADP-ribose] polymerase 12, partial [Chelonia mydas] | 0.0 |
| pfu_aug2.0_875.1_17900.t1 | gi|548464230|ref|XP_005679666.1| | PREDICTED: poly [ADP-ribose] polymerase 12, partial [Capra hircus] | 0.0 |
| pfu_aug2.0_875.1_17900.t1 | gi|555975693|ref|XP_005899828.1| | PREDICTED: poly [ADP-ribose] polymerase 12 [Bos mutus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_875.1_17900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_875.1_17900.t1 atggcgtacggatttcaaccatcatcattcgttcctccacgtgtagaggtgccatttgaagaacagttagctagaaaaac gatagaaattttgtgtagggcgaaaaaagcactcagtctccgggatttggtgatcgagcttggcagggaatcccacctaa gattgagcgaaaaacagcttcatgacattattacaaagtttccaaataattttaactttgtgtacaaggacagagaaata gaaaatgtttatgtatcagcagtgacaaagctgagtttatgcagagagcattgctcaaagcagggacagtgtggggggta ccctgcatgtgatggcctgcatatctgtaaattctacttgttgtcgaataattgtcgtgtctcaaaacagggaaagactt gtctattcggacatgatcttacatcgcagcacaatattcaactgctgaaaaggcatcttcttgatcagttacccgtctcg aacatcaaaattttgttccgaactactgaaagccgatcaagaaccacactaccaagtatatgcaaattttacaatatcaa tgctggttgtagagcagagaaagaaggcaaaccatgcccatatctccacatgtgcaagttttatgtaattggtcagtgta gatttgggaagggctgcaaaagaaaccatgacatctttaaccaacaagtgagagacatactaacaaaatatgggattgat gtgaacagaagtcctaaggagatactagcagagattcgaagtgcagattttgactttggagatgacaccagcagccaggc ctctggaagtactgtagatcattttaggcgtgtctcagagcttgatcaagatctgtcagatgatgatgacgagactgagt ctacaacgatgaacgccaatgtcgaccctaccgtaactgaaatttgcatcttccatctacgtggacgctgcgcatttggc aaaagctgccgcaaacttcactacaatacaacatacgtttggcaatacaggaagaaagatctgatggagtgggtgaattt ctccgatgatcacaacagagagattgaaatgacgtatagtgatgtgaataacaccgagtgctatctagatgcaggaaacg acttgcttctgaggatgaattttgatacgatgcgcggacaaggtttacagggaggccagattgctttacaggtggacgtt agacggctgtccacagcatcgtctgagagggagaaattccagccactggccactacatggacatggtactggcaggacca aactggacaatgggtggagtacggtcaaggggctacgtctggttatagaagcagtgttgatagttcaagcatggagcaga aatatttggagaaccccagcggccaaatgcggtttgccactatgggccatgagtatgccatggattttgccgcaatgtgt caacagaatatggagtacgagacgaaacggaaaattactggtgtttcgtcgtgtgtagatgaagtgaagaaaataaaaga tcagttctttatgacgatgcccagtacagcttatattacatgtgtggagagagttgaaaatggagaactctggatgaact tcgcaagcaaaatggagaaaatgaagagaaaaagcaggaacagtaccgttgatcaacgcacattatttcacggtacaacg agcaaatatgtggatgccatatgtagacaaggttttgacttccgatttagcggaaaaactaccggtactaaatttggcaa gggaagctactttgccaagagtgcacgttatgcagacagttacactgaccatggggcagataaagagatgtttctggtta aagttctagtcggggatttcgcaaagggagataaatccatggttcgtccaccgcccaaaaatccagcagacccgtttgaa ttgttcgattcttgtgtagacgatgtttccaaaccaaacatttttgtgatttttacgtttgatcaggtttacccggaata tgttattaggtatcgtaacagaaacgttaccgatgtttaa |
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Protein
| Protein ID | pfu_aug2.0_875.1_17900.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_875.1_17900.t1 MAYGFQPSSFVPPRVEVPFEEQLARKTIEILCRAKKALSLRDLVIELGRESHLRLSEKQLHDIITKFPNNFNFVYKDREI ENVYVSAVTKLSLCREHCSKQGQCGGYPACDGLHICKFYLLSNNCRVSKQGKTCLFGHDLTSQHNIQLLKRHLLDQLPVS NIKILFRTTESRSRTTLPSICKFYNINAGCRAEKEGKPCPYLHMCKFYVIGQCRFGKGCKRNHDIFNQQVRDILTKYGID VNRSPKEILAEIRSADFDFGDDTSSQASGSTVDHFRRVSELDQDLSDDDDETESTTMNANVDPTVTEICIFHLRGRCAFG KSCRKLHYNTTYVWQYRKKDLMEWVNFSDDHNREIEMTYSDVNNTECYLDAGNDLLLRMNFDTMRGQGLQGGQIALQVDV RRLSTASSEREKFQPLATTWTWYWQDQTGQWVEYGQGATSGYRSSVDSSSMEQKYLENPSGQMRFATMGHEYAMDFAAMC QQNMEYETKRKITGVSSCVDEVKKIKDQFFMTMPSTAYITCVERVENGELWMNFASKMEKMKRKSRNSTVDQRTLFHGTT SKYVDAICRQGFDFRFSGKTTGTKFGKGSYFAKSARYADSYTDHGADKEMFLVKVLVGDFAKGDKSMVRPPPKNPADPFE LFDSCVDDVSKPNIFVIFTFDQVYPEYVIRYRNRNVTDV |
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