Gene
| Gene Model ID | pfu_aug2.0_876.1_21233 |
|---|---|
| Locus | scaffold876.1 : 88966 ... 114595 : + |
| To GenomeBrowser | scaffold876.1:88966..114595 |
| Genes list of scaffold | scaffold876.1 |
| Synonym | NA |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u3 small nucleolar ribonucleoprotein protein imp3-like | GO:0000166 GO:0003730 GO:0003735 GO:0005737 GO:0006364 GO:0019843 GO:0030515 GO:0032040 GO:0034457 GO:0045903 GO:0051028 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_876.1_21233.t1 | 1 | 1 | Ribosomal_S4 | 5 | 100 | 3.2e-06 | 27.4 | 1.6e-09 | 4.6e-06 | 26.9 |
| pfu_aug2.0_876.1_21233.t1 | 2 | 1 | S4 | 82 | 92 | 1.4e-09 | 37.2 | 0.18 | 530.0 | 0.1 |
| pfu_aug2.0_876.1_21233.t1 | 2 | 2 | S4 | 108 | 154 | 1.4e-09 | 37.2 | 4.2e-12 | 1.2e-08 | 34.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_876.1_21233.t1 | gi|291233285|ref|XP_002736586.1| | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_876.1_21233.t1 | gi|499039870|ref|XP_004570567.1| | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Maylandia zebra] | 0.0 |
| pfu_aug2.0_876.1_21233.t1 | gi|597773922|ref|XP_007250689.1| | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_876.1_21233.t1 | gi|554857901|ref|XP_005939100.1| | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3-like [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_876.1_21233.t1 | gi|742236633|ref|XP_010902512.1| | PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP3 [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_876.1_21233.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_876.1_21233.t1 atggtcagaaagttaaaatttcacgagaagaagctattaaagaaagtcgactttatatcttgggaggtggacaataatct ccatgaaatcaaagtaatgagaaaataccatatccagcgcagagaagattacacaaaatacaataaattggccagacatg ttagggaattagcacggaaaatcaaagaactagaccaaaaggatccatttagagctgaagccacgtcacaattattggaa aaactacataacattgggctggttcccactaggagaagtttggagatggcagacaaagtgaacgcatcatcattttgtag gaggcgccttccagttgtaatggtacggaatcacatggcagaaaatttgaaaacagcgacaacttttatagagcagggtc acatcagagttggtcctgaaatggttacggatccagcatttctcatcacaagaaatatggaggacttcataacatggact gacacatccaagataaggaagcatgttctggattataatgaaatgagagacgactttgaccttatgagctga |
|
Protein
| Protein ID | pfu_aug2.0_876.1_21233.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_876.1_21233.t1 MVRKLKFHEKKLLKKVDFISWEVDNNLHEIKVMRKYHIQRREDYTKYNKLARHVRELARKIKELDQKDPFRAEATSQLLE KLHNIGLVPTRRSLEMADKVNASSFCRRRLPVVMVRNHMAENLKTATTFIEQGHIRVGPEMVTDPAFLITRNMEDFITWT DTSKIRKHVLDYNEMRDDFDLMS |
|