Gene
| Gene Model ID | pfu_aug2.0_876.1_21234 |
|---|---|
| Locus | scaffold876.1 : 117783 ... 143165 : - |
| To GenomeBrowser | scaffold876.1:117783..143165 |
| Genes list of scaffold | scaffold876.1 |
| Synonym | pfu_aug1.0_849.1_58273 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_876.1_21234.t1 | 1 | 1 | Fringe | 71 | 123 | 2.8e-07 | 30.0 | 2.6e-11 | 3.9e-07 | 29.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_876.1_21234.t1 | gi|241594063|ref|XP_002404236.1| | beta-1,3-N-acetylglucosaminyltransferase radical fringe, putative [Ixodes scapularis] | 2.0e-09 |
| pfu_aug2.0_876.1_21234.t1 | gi|348540670|ref|XP_003457810.1| | PREDICTED: beta-1,3-N-acetylglucosaminyltransferase lunatic fringe-like isoform X1 [Oreochromis niloticus] | 4.0e-09 |
| pfu_aug2.0_876.1_21234.t1 | gi|542253736|ref|XP_005462699.1| | PREDICTED: beta-1,3-N-acetylglucosaminyltransferase lunatic fringe-like isoform X2 [Oreochromis niloticus] | 4.0e-09 |
Transcript
| Transcript ID | pfu_aug2.0_876.1_21234.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_876.1_21234.t1 atgataactatcttaacgtggataatctggtcaaactgttacaaggttacgatcaccagggcacttggtatctcggaaga cccagtagaccgacttttgtggattttaagaatggatggatacagagaagaagtcgaaaatgtaaaaagtaacgccggac gacggacgatgcgctatgagaatagctcacttgagctacgctcaggtatactattgaagactgatctcaccttcatccag acttttcactcacatctagaagatatgagaactatcaaagatctacaaaaacaggtaaccattggagaaggttgggtgcg aaatgtgattgatttaaaaggttttaataaatataaagatcctacaaggtttctctcactacattgtatgctacatccta aagctgaaaaatgtaaattttga |
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Protein
| Protein ID | pfu_aug2.0_876.1_21234.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_876.1_21234.t1 MITILTWIIWSNCYKVTITRALGISEDPVDRLLWILRMDGYREEVENVKSNAGRRTMRYENSSLELRSGILLKTDLTFIQ TFHSHLEDMRTIKDLQKQVTIGEGWVRNVIDLKGFNKYKDPTRFLSLHCMLHPKAEKCKF |
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