Gene
| Gene Model ID | pfu_aug2.0_883.1_11266 |
|---|---|
| Locus | scaffold883.1 : 58996 ... 70644 : + |
| To GenomeBrowser | scaffold883.1:58996..70644 |
| Genes list of scaffold | scaffold883.1 |
| Synonym | pfu_aug1.0_156.1_22035 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| growth differentiation factor 8 | GO:0007517 GO:0048519 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_883.1_11266.t1 | 1 | 1 | TGFb_propeptide | 63 | 274 | 4.1e-27 | 94.9 | 8.2e-31 | 6.1e-27 | 94.4 |
| pfu_aug2.0_883.1_11266.t1 | 1 | 1 | TGF_beta | 317 | 415 | 1.6e-23 | 82.9 | 4.8e-27 | 3.6e-23 | 81.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_883.1_11266.t1 | gi|676496555|ref|XP_009067253.1| | hypothetical protein LOTGIDRAFT_82990, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_883.1_11266.t1 | gi|657800176|ref|XP_008327219.1| | PREDICTED: growth/differentiation factor 8-like [Cynoglossus semilaevis] | 0.0 |
| pfu_aug2.0_883.1_11266.t1 | gi|185134856|ref|NP_001117755.1| | myostatin 2 precursor [Oncorhynchus mykiss] | 0.0 |
| pfu_aug2.0_883.1_11266.t1 | gi|734608402|ref|XP_010731452.1| | PREDICTED: growth/differentiation factor 8 [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_883.1_11266.t1 | gi|657578788|ref|XP_008293283.1| | PREDICTED: growth/differentiation factor 8 [Stegastes partitus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_883.1_11266.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_883.1_11266.t1 atgtattcggtttttcctttgatgttttacttgttttacttagtttcacaatttgagaaatcgcatgttctctcccagca aataagacttgaagatatacaccaatacgacacgtcaaatgttaacgattctgttattagaagtgtttttgcgcaaaatg tagaagcaaacgagactataggaaaccccaggtgtaaatcatgtcatattcgtgaacagcagaagaggaagaggatagaa tcaataaagaacaaaattacacatgctttgaagtttgatattcatggacttccaaacattacagatgcacggattccaag agttccgtcttatcagagattgttagagagatacgatcttatgaacaatgccaatgtacaagcggattcgccctatcggt cctctcttgaagaccaaatggaggaatatggacgtacggaaagaacttatatgctcggaaaatcagttccatcgtggaca aacgtggaggaacgagatacagtttactttgacaccccacagttggtgaatgaagaaattcgtcgggccttattatggat atatgtaaaccctgagaatcaagacttcagagtgccaaataacgtgacagaaatttatctttactcattggttcctcccg gaaaaaatggacgggcacctgttaggaattatttgatgaggagaaaacggagacctcaccaaaccgttgggtggcaccat tttgacattacatggcttgtagctttgtggaccagacatcctagcagaaatttaggactggtagtagaggctaaggacgt caatgattataatatgatcgtattcccaggagccactggtgataattttggactggagccaactttggatatgaaaacag atatctatttaggaacccatcgttcaaagagatcagtaaatttaaggtgcaatgaagaggaccaagtagaatcgtgctgt aggtatccgctaacagttgatttcatcgaatttggatgggattttgtgatagctcctattcgctatgctgcatattattg cgctggcgagtgtgagaatgagcatatggacgaaaatccacatacaagagtactccaggaagtggatcattcgaacactc ctagagcactgccttgttgtactccgacgagattatcgcatttatctatgctttattttgatcatcaagcgagaattcga atgacactgcttcctagaatgaaagttgaaagatgcgcgtgtcagtaa |
|
Protein
| Protein ID | pfu_aug2.0_883.1_11266.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_883.1_11266.t1 MYSVFPLMFYLFYLVSQFEKSHVLSQQIRLEDIHQYDTSNVNDSVIRSVFAQNVEANETIGNPRCKSCHIREQQKRKRIE SIKNKITHALKFDIHGLPNITDARIPRVPSYQRLLERYDLMNNANVQADSPYRSSLEDQMEEYGRTERTYMLGKSVPSWT NVEERDTVYFDTPQLVNEEIRRALLWIYVNPENQDFRVPNNVTEIYLYSLVPPGKNGRAPVRNYLMRRKRRPHQTVGWHH FDITWLVALWTRHPSRNLGLVVEAKDVNDYNMIVFPGATGDNFGLEPTLDMKTDIYLGTHRSKRSVNLRCNEEDQVESCC RYPLTVDFIEFGWDFVIAPIRYAAYYCAGECENEHMDENPHTRVLQEVDHSNTPRALPCCTPTRLSHLSMLYFDHQARIR MTLLPRMKVERCACQ |
|