Gene
| Gene Model ID | pfu_aug2.0_885.1_17909 |
|---|---|
| Locus | scaffold885.1 : 184312 ... 209434 : - |
| To GenomeBrowser | scaffold885.1:184312..209434 |
| Genes list of scaffold | scaffold885.1 |
| Synonym | pfu_aug1.0_10712.1_31967 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_885.1_17909.t1 | 1 | 1 | CENP-L | 158 | 309 | 1.0e-19 | 70.9 | 2.8e-23 | 2.1e-19 | 69.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_885.1_17909.t1 | gi|585680931|ref|XP_002737410.2| | PREDICTED: centromere protein L-like [Saccoglossus kowalevskii] | 2.99878e-43 |
| pfu_aug2.0_885.1_17909.t1 | gi|524891049|ref|XP_005102063.1| | PREDICTED: centromere protein L-like isoform X1 [Aplysia californica] | 1.0e-34 |
| pfu_aug2.0_885.1_17909.t1 | gi|115770287|ref|XP_793614.2| | PREDICTED: centromere protein L isoform X1 [Strongylocentrotus purpuratus] | 4.0e-29 |
| pfu_aug2.0_885.1_17909.t1 | gi|632969601|ref|XP_007901170.1| | PREDICTED: centromere protein L isoform X1 [Callorhinchus milii] | 1.0e-27 |
| pfu_aug2.0_885.1_17909.t1 | gi|148234486|ref|NP_001090496.1| | centromere protein L [Xenopus laevis] | 3.0e-27 |
Transcript
| Transcript ID | pfu_aug2.0_885.1_17909.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_885.1_17909.t1 atgagtataagaagaagtggcacgagaccttctatagctcgaggacagctgaggtttactccatttggtagaactacaca gcgtagaggtctgggtggagcatcaagacttggtgagaagaccccacagactcatcctgaagatctggaggagcaatcag caaacttaaaaggtttgacatcaaagacatggaaagtatacagggtttcaccactgtacaaattcaacacaaatcctcgc tgtcttaaaagatacgccagcagtctatctgctaatgttgaagctaagcgcatacgcatatccaggcgatctttccgcct gtaccgcaaactatatgcatttgatccagatgctgtgcagatcctgttaaaaggaaaaacaaggacagggaaccaggagg ttgtacagctgacagcagttctatgtgggttggggctggaggagaaccccctccctgaaggaaaccgagagaaattcatg tactaccccttactgctggtgaaaggaacagtggcactgtcagatacacttatatgctggatacagaaccattttgactg taaagtgtcatcaatggctgtcagtccatatgagttgtcttggatggttgccatgtggagtggcagtaccacagatcctg tacatcagagaaagccagtacagttggtatgcagttacatcagaggaagccagtacagttggtatgcagtgtaccttaaa gatgagattgttaccatggttacctatagcatccatcagtctgattcagatgattttacagctgaggaagtcacagattt catcaaggctgtggagggacatttctatgatctttttcatgttaaactttctgctatgtgtttgtcatttgttggaacgt cactgtcttatgttggaaaggacggaaggcttaagattttttccaaggatcatgctctaagaattttacgacattttaca ctgctatctgttgaacattttacccagggacattga |
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Protein
| Protein ID | pfu_aug2.0_885.1_17909.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_885.1_17909.t1 MSIRRSGTRPSIARGQLRFTPFGRTTQRRGLGGASRLGEKTPQTHPEDLEEQSANLKGLTSKTWKVYRVSPLYKFNTNPR CLKRYASSLSANVEAKRIRISRRSFRLYRKLYAFDPDAVQILLKGKTRTGNQEVVQLTAVLCGLGLEENPLPEGNREKFM YYPLLLVKGTVALSDTLICWIQNHFDCKVSSMAVSPYELSWMVAMWSGSTTDPVHQRKPVQLVCSYIRGSQYSWYAVYLK DEIVTMVTYSIHQSDSDDFTAEEVTDFIKAVEGHFYDLFHVKLSAMCLSFVGTSLSYVGKDGRLKIFSKDHALRILRHFT LLSVEHFTQGH |
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