Gene
| Gene Model ID | pfu_aug2.0_887.1_24489 |
|---|---|
| Locus | scaffold887.1 : 42226 ... 65588 : + |
| To GenomeBrowser | scaffold887.1:42226..65588 |
| Genes list of scaffold | scaffold887.1 |
| Synonym | pfu_aug1.0_33058.1_33868 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_887.1_24489.t1 | 1 | 1 | PGI | 1 | 176 | 0.0 | 243.8 | 0.0 | 0.0 | 243.3 |
| pfu_aug2.0_887.1_24489.t1 | 2 | 1 | Actin | 244 | 294 | 3.8e-15 | 55.2 | 5.5e-06 | 0.041 | 12.3 |
| pfu_aug2.0_887.1_24489.t1 | 2 | 2 | Actin | 454 | 754 | 3.8e-15 | 55.2 | 1.5e-14 | 1.1e-10 | 40.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_887.1_24489.t1 | gi|514744213|ref|XP_005019146.1| | PREDICTED: actin-related protein 8 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_887.1_24489.t1 | gi|118096824|ref|XP_414336.2| | PREDICTED: actin-related protein 8 isoform X2 [Gallus gallus] | 0.0 |
| pfu_aug2.0_887.1_24489.t1 | gi|527255181|ref|XP_005145874.1| | PREDICTED: actin-related protein 8 [Melopsittacus undulatus] | 0.0 |
| pfu_aug2.0_887.1_24489.t1 | gi|513205060|ref|XP_004944626.1| | PREDICTED: actin-related protein 8 isoform X3 [Gallus gallus] | 0.0 |
| pfu_aug2.0_887.1_24489.t1 | gi|733908021|ref|XP_010716943.1| | PREDICTED: actin-related protein 8, partial [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_887.1_24489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24489.t1 atgcaccggtttgcagcgtatttccaacaaggagacatggagagtaacggtaaatacatcacgtgtagcggtcagcgtgt taactatcatacaggacctataatatggggagagccggggacaaatggacagcatgccttctatcaactgattcatcaag gtaccagtctgataccctgtgactttatgatgcctattaccacacagaatcccatacaaggaggactacatcatgaaata ttggcagctaacttcttagcccagacagaggcgttaatgacaggaaaatcttcagcagtagctaaagaggaactggtcaa gtctgggatggacgaggaaaatataaacaaaatattaccacataaggtgtttgagggtaacagacccagtaactctatac tcttccagaaacttacaccatttatgcttggagttttaattgcaatgtatgaacataagatttttgtacaaggacagatc tgggacataaattcatacgatcaatggggtgagcttgggaacaaattgccccacatcagacttgtcagactagaatataa gccacttgatctgcctcccccgcaagctagctttatcaggaatgcggtcaagtgcgacggcttgacttcagaacccttct tctggcttcccccgtctcttcacgttaccatttggtggcagtgtagtggctttagggtccacggcatgccaatctggccc cttcaaacctctaccgtcgttataatacacccagggtccagcagtttacgtataggccgagcatctgacgctttacccgt aaccatcccacactgtatagcacgtagagtacataaacctcagcaaagtcaagtacatgaaagctggatcctcagaccag aagcacagcatcctgaggtgaagcatcagcagaaattaggactgaagcatgcagaggaaactctagcctctcgtccgacg tctaccggggaatacagaccaagtgtgccgtacagacagctatacagtcacaatcatggagttagaggtcagaaaacaga ggtcatctgtcccaagatgtggacctgtacagataataaaccatttgtcgtgggagaagaggctcttgccattcatccat cagaagactacatactacactggccaatcagatgtggccgactaaatctaacggacaacaaaccgatgtcactcacatcc atcatggctgacttagagacaatctgggcaacggccatacagaaccacttagatataccgcttaaagatttaagggtata taaagcaatacttctgatacctgatgtctacatccataagcatgtcaaacttatgatgagtgtactactagataaactag gctttggttgtgccacagtacatcaggtatcaggacaggtgccacggtacatcagggtaaccatggacttcggagggagt gacatttcccgctgttttcattggctgcttgggaggtcaggaacaaacatgcgggagctggacattcgacagacgttaga ttgtacactactacaggacatgaaggaaacctactgccatctagaccaggacagctttgggtttcaagatcagtccattc tcataaagagaccccaacagaacattataaagtacagtataaaactcggggatgagaccatcttagctcctatgggcttg tttttccctgatttactcacgttacacggggcaaacttggcacacgtacaacacaggagtgagggagaccctcaggatcc acatgatgaattctacttacaatctacatccagagaggccaaactgtcaaagaagaaagataacacagagagtaaagaca taaatgagtcgttagtagatgacgctactcagcaggcaatagatgaagactcaaacgatgctcaggaaaatatgcagttt cactacataacttttacatcatatggtaaaactgcagaaggagatgagttgaaaaagaagatgtacagttgtatcgttgt ggtgggcggtggattgatgtttgaaggtgcacagcaatggctacaatacagagtgtgggtagggatgccacctcaagtgt ggaaagggatggcacctcagtacagactgatgttagaaactatggatgtactaaccagacgaaaggaccttgatccgagg atagtatgctggaagggggcggccatcttggcgtgtttagactctacacaggaattatggatccagcagaaggaatggaa acagtttgatgtgaggatgctgagagaaagggcaccatttgtatggtga |
|
Protein
| Protein ID | pfu_aug2.0_887.1_24489.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24489.t1 MHRFAAYFQQGDMESNGKYITCSGQRVNYHTGPIIWGEPGTNGQHAFYQLIHQGTSLIPCDFMMPITTQNPIQGGLHHEI LAANFLAQTEALMTGKSSAVAKEELVKSGMDEENINKILPHKVFEGNRPSNSILFQKLTPFMLGVLIAMYEHKIFVQGQI WDINSYDQWGELGNKLPHIRLVRLEYKPLDLPPPQASFIRNAVKCDGLTSEPFFWLPPSLHVTIWWQCSGFRVHGMPIWP LQTSTVVIIHPGSSSLRIGRASDALPVTIPHCIARRVHKPQQSQVHESWILRPEAQHPEVKHQQKLGLKHAEETLASRPT STGEYRPSVPYRQLYSHNHGVRGQKTEVICPKMWTCTDNKPFVVGEEALAIHPSEDYILHWPIRCGRLNLTDNKPMSLTS IMADLETIWATAIQNHLDIPLKDLRVYKAILLIPDVYIHKHVKLMMSVLLDKLGFGCATVHQVSGQVPRYIRVTMDFGGS DISRCFHWLLGRSGTNMRELDIRQTLDCTLLQDMKETYCHLDQDSFGFQDQSILIKRPQQNIIKYSIKLGDETILAPMGL FFPDLLTLHGANLAHVQHRSEGDPQDPHDEFYLQSTSREAKLSKKKDNTESKDINESLVDDATQQAIDEDSNDAQENMQF HYITFTSYGKTAEGDELKKKMYSCIVVVGGGLMFEGAQQWLQYRVWVGMPPQVWKGMAPQYRLMLETMDVLTRRKDLDPR IVCWKGAAILACLDSTQELWIQQKEWKQFDVRMLRERAPFVW |
|