Gene
| Gene Model ID | pfu_aug2.0_887.1_24490 |
|---|---|
| Locus | scaffold887.1 : 91986 ... 114392 : + |
| To GenomeBrowser | scaffold887.1:91986..114392 |
| Genes list of scaffold | scaffold887.1 |
| Synonym | pfu_aug1.0_70570.1_27651 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| protein cbfa2t1- partial | GO:0009987 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_887.1_24490.t1 | 1 | 1 | TAFH | 57 | 110 | 9.2e-12 | 44.4 | 7.0e-15 | 2.6e-11 | 43.0 |
| pfu_aug2.0_887.1_24490.t1 | 3 | 1 | NHR2 | 230 | 279 | 1.5e-19 | 69.2 | 4.1e-23 | 1.5e-19 | 69.2 |
| pfu_aug2.0_887.1_24490.t1 | 3 | 2 | NHR2 | 350 | 374 | 1.5e-19 | 69.2 | 1.1 | 4200.0 | -2.7 |
| pfu_aug2.0_887.1_24490.t1 | 3 | 3 | NHR2 | 412 | 436 | 1.5e-19 | 69.2 | 1.3 | 4800.0 | -2.9 |
| pfu_aug2.0_887.1_24490.t1 | 1 | 1 | zf-MYND | 438 | 474 | 3.4e-08 | 33.2 | 1.7e-11 | 6.4e-08 | 32.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_887.1_24490.t1 | gi|676482804|ref|XP_009062821.1| | hypothetical protein LOTGIDRAFT_235377 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_887.1_24490.t1 | gi|524892699|ref|XP_005102875.1| | PREDICTED: protein CBFA2T1-like, partial [Aplysia californica] | 0.0 |
| pfu_aug2.0_887.1_24490.t1 | gi|557002495|ref|XP_006003559.1| | PREDICTED: protein CBFA2T1-like isoform X3 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_887.1_24490.t1 | gi|557002492|ref|XP_006003558.1| | PREDICTED: protein CBFA2T1-like isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_887.1_24490.t1 | gi|557002489|ref|XP_006003557.1| | PREDICTED: protein CBFA2T1-like isoform X1 [Latimeria chalumnae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_887.1_24490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24490.t1 atgcccgagtcaccggacatcaaacccgtgggtcagcatgtacagtccccgggggctaacttacccgtgtgtgcggcacg tgactccaataggcctcagagcgggggtagcggtaactcaggtcagactaacacttttgtgataaatttnctcaccagat ataggggagagagtgaggactctggtcttaggactcgtgaggccaccaactttccactacgaccatttgttataccattc ttgaaggccaacctgccattactacagagggagttattacactgtgctcgcatggccaaacagagtccccagcagtacct agctcataacgagcacatcttatttgatgccactacatcctcccctacagaatctcatgatataaacgaaaacggcaaac ggagatcacctgacagtagaagtaaagagaatggtatagacccgcctggtgaaggactacaccctgccaagcgtcaccac cccctcagtcctcgggtcagtcctaacggagcgctaaaccttaacggaggccctatacggctgggagacatcagtctgtc acgggagcttagggagagagagaggatggagagggagagacaggatagggaaggagatagggagagcagacatttcccat tcaataataattatactcggtcagattcgtttgacccgttagaaaggatggatgaagactggagacatgtagaaacaatg ttaaactgtataattggtatggtagacaagacgaagcgagcgttagcagtgttacaggaacgtagcctacgtgacagaga ggaactgtcgttatggatgcgtcgtcacgccgagggaatggacggagatcctaaaaaacgctctaatgacatgatggcac accagatacgacaaacagaagatagagtcactgatgtcagaaggagggcagaggaagctgttcaggaggtcaaacgacaa gccatgctggagcttcaaaaagcggtgtcagcagcggagcacaaggccactgaaatgatctctacagagcgtgttaagat ggagcgcacagtaatggaggctcggaaacaagctcgtgaagaaatcttggctcaggtcaacagacaggaagaatccaagg aagctgttcaggaggtcaaacgacaagccatgctggagcttcaaaaagcggtgtcagcagcggagcacaaggccactgaa atgatctctacagagcgtgttaagatggagcgcacagtaatggaggctcggaaacaagctcgtgaagaaatcttggctca ggtcaacagacaggaagaatccagtgagagttgctggaactgtgggcgaaaggcaagtgagacatgtagtgggtgtaatg tagccagatactgtggttcgttctgtcagcacaaagactgggaaaatcaccatcatgtgtgtggcaagtcatccctgacc agcgacccagactctcagagagattgtagggcccccatgccccctgtaccacacactcagcatctgacaactgtaaaatc accagggcaacccgtcgccacgacaacagcatcatcacatggcaacagtccagttacatctcctactagaactcagtcac gctccaattccccctcagacacgcctgatgtaacacgatag |
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Protein
| Protein ID | pfu_aug2.0_887.1_24490.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24490.t1 MPESPDIKPVGQHVQSPGANLPVCAARDSNRPQSGGSGNSGQTNTFVINXLTRYRGESEDSGLRTREATNFPLRPFVIPF LKANLPLLQRELLHCARMAKQSPQQYLAHNEHILFDATTSSPTESHDINENGKRRSPDSRSKENGIDPPGEGLHPAKRHH PLSPRVSPNGALNLNGGPIRLGDISLSRELRERERMERERQDREGDRESRHFPFNNNYTRSDSFDPLERMDEDWRHVETM LNCIIGMVDKTKRALAVLQERSLRDREELSLWMRRHAEGMDGDPKKRSNDMMAHQIRQTEDRVTDVRRRAEEAVQEVKRQ AMLELQKAVSAAEHKATEMISTERVKMERTVMEARKQAREEILAQVNRQEESKEAVQEVKRQAMLELQKAVSAAEHKATE MISTERVKMERTVMEARKQAREEILAQVNRQEESSESCWNCGRKASETCSGCNVARYCGSFCQHKDWENHHHVCGKSSLT SDPDSQRDCRAPMPPVPHTQHLTTVKSPGQPVATTTASSHGNSPVTSPTRTQSRSNSPSDTPDVTR |
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