Gene
| Gene Model ID | pfu_aug2.0_887.1_24491 |
|---|---|
| Locus | scaffold887.1 : 115399 ... 117205 : - |
| To GenomeBrowser | scaffold887.1:115399..117205 |
| Genes list of scaffold | scaffold887.1 |
| Synonym | pfu_aug1.0_121198.1_13762 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_887.1_24491.t1 | 1 | 1 | DUF4518 | 26 | 217 | 1.8e-40 | 138.6 | 1.54143e-44 | 2.2e-40 | 138.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_887.1_24491.t1 | gi|573900733|ref|XP_006638094.1| | PREDICTED: uncharacterized protein C3orf38 homolog [Lepisosteus oculatus] | 5.0e-28 |
| pfu_aug2.0_887.1_24491.t1 | gi|291227785|ref|XP_002733864.1| | PREDICTED: uncharacterized protein C3orf38 homolog [Saccoglossus kowalevskii] | 2.0e-27 |
| pfu_aug2.0_887.1_24491.t1 | gi|292617558|ref|XP_002663392.1| | PREDICTED: uncharacterized protein C3orf38 homolog isoform X1 [Danio rerio] | 5.0e-27 |
| pfu_aug2.0_887.1_24491.t1 | gi|696970628|ref|XP_009555512.1| | PREDICTED: uncharacterized protein C3orf38 homolog [Cuculus canorus] | 3.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_887.1_24491.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24491.t1 atgtcaacacaaagaaaggatcggctcctcccggtggcatgcacagaatcacacacatacatatcaattcaggtacagga atcatcatcaaaatcctcggtaatagagaaatacagtacagataacagcaatggtatcattccacacggagaggaaaagt ccagcgcaatatgtggacatgaggaatccgagatggacattgccagtccatacttacagaagtttggcgatacttttact agatggtttttcgagcgttggaattctgagaatgcctcactgaatagcattccagattcagtcaatggcttcggtcctca ttctttctgggacaacgctagtcttatgtcactctgtatttttccagagcgcgcatgcgtcgaggaccaggcagcaggcg ccatggcagtagcgaaaaaactttcgttttacgtaaaagatcaacaattattgttcaatccaaacatatcttcggatgga gtaaaggtaaaatctgacgtcaacggcctcctgatggtattcgtcagtgggaccgttcatcgtcacgatgattgtgttgg tgtttttgatcaaacctttggactgatgaaagtaccgagcatgatgtacgacgaatggaaaataaaactcgtgcatctga aaatagatgtatctaatccatatcccaagctcgaggcgacaggtacgagttccagtaaagtgttagatctagatcttgaa aattgttgtaagaatgatctgtga |
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Protein
| Protein ID | pfu_aug2.0_887.1_24491.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24491.t1 MSTQRKDRLLPVACTESHTYISIQVQESSSKSSVIEKYSTDNSNGIIPHGEEKSSAICGHEESEMDIASPYLQKFGDTFT RWFFERWNSENASLNSIPDSVNGFGPHSFWDNASLMSLCIFPERACVEDQAAGAMAVAKKLSFYVKDQQLLFNPNISSDG VKVKSDVNGLLMVFVSGTVHRHDDCVGVFDQTFGLMKVPSMMYDEWKIKLVHLKIDVSNPYPKLEATGTSSSKVLDLDLE NCCKNDL |
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