Gene
| Gene Model ID | pfu_aug2.0_887.1_24494 |
|---|---|
| Locus | scaffold887.1 : 149326 ... 166401 : + |
| To GenomeBrowser | scaffold887.1:149326..166401 |
| Genes list of scaffold | scaffold887.1 |
| Synonym | pfu_aug1.0_10295.1_24714 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_887.1_24494.t1 | 10 | 1 | LRR_4 | 36 | 75 | 0.0 | 193.4 | 2.5e-10 | 4.6e-07 | 29.3 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 1 | LRR_8 | 37 | 77 | 0.0 | 173.1 | 2.9e-07 | 0.00053 | 19.6 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 1 | LRR_1 | 38 | 57 | 5.2e-33 | 107.9 | 0.027 | 49.0 | 4.5 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 1 | LRR_7 | 38 | 51 | 2.9e-24 | 80.8 | 0.088 | 160.0 | 3.2 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 1 | LRR_6 | 38 | 50 | 9.9e-12 | 43.6 | 1.5 | 2700.0 | -1.0 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 2 | LRR_8 | 59 | 117 | 0.0 | 173.1 | 6.0e-13 | 1.1e-09 | 37.8 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 2 | LRR_7 | 59 | 75 | 2.9e-24 | 80.8 | 5.2e-05 | 0.097 | 12.9 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 2 | LRR_6 | 59 | 72 | 9.9e-12 | 43.6 | 0.15 | 280.0 | 2.1 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 2 | LRR_1 | 61 | 81 | 5.2e-33 | 107.9 | 7.6e-05 | 0.14 | 12.2 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 2 | LRR_4 | 82 | 121 | 0.0 | 193.4 | 7.5e-11 | 1.4e-07 | 30.9 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 3 | LRR_6 | 82 | 95 | 9.9e-12 | 43.6 | 0.0066 | 12.0 | 6.3 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 3 | LRR_1 | 83 | 102 | 5.2e-33 | 107.9 | 0.00017 | 0.31 | 11.2 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 3 | LRR_7 | 83 | 98 | 2.9e-24 | 80.8 | 0.00027 | 0.5 | 10.7 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 4 | LRR_6 | 104 | 119 | 9.9e-12 | 43.6 | 0.089 | 170.0 | 2.8 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 3 | LRR_4 | 106 | 144 | 0.0 | 193.4 | 1.3e-09 | 2.5e-06 | 26.9 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 4 | LRR_1 | 106 | 127 | 5.2e-33 | 107.9 | 0.0093 | 17.0 | 5.9 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 4 | LRR_7 | 106 | 120 | 2.9e-24 | 80.8 | 0.22 | 410.0 | 2.0 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 5 | LRR_6 | 127 | 142 | 9.9e-12 | 43.6 | 0.0015 | 2.8 | 8.2 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 3 | LRR_8 | 128 | 186 | 0.0 | 173.1 | 1.3e-10 | 2.5e-07 | 30.3 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 5 | LRR_7 | 128 | 144 | 2.9e-24 | 80.8 | 0.00018 | 0.34 | 11.2 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 5 | LRR_1 | 129 | 148 | 5.2e-33 | 107.9 | 0.00048 | 0.9 | 9.8 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 6 | LRR_6 | 151 | 165 | 9.9e-12 | 43.6 | 0.036 | 66.0 | 4.0 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 6 | LRR_1 | 155 | 171 | 5.2e-33 | 107.9 | 0.00084 | 1.6 | 9.0 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 6 | LRR_7 | 155 | 167 | 2.9e-24 | 80.8 | 0.0042 | 7.8 | 7.1 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 4 | LRR_4 | 156 | 191 | 0.0 | 193.4 | 2.2e-08 | 4.0e-05 | 23.1 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 5 | LRR_4 | 176 | 217 | 0.0 | 193.4 | 9.9e-12 | 1.8e-08 | 33.7 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 4 | LRR_8 | 176 | 230 | 0.0 | 173.1 | 2.2e-10 | 4.1e-07 | 29.6 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 7 | LRR_1 | 176 | 196 | 5.2e-33 | 107.9 | 0.0014 | 2.5 | 8.4 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 7 | LRR_7 | 177 | 190 | 2.9e-24 | 80.8 | 0.5 | 930.0 | 0.9 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 7 | LRR_6 | 196 | 211 | 9.9e-12 | 43.6 | 0.016 | 30.0 | 5.1 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 5 | LRR_8 | 197 | 255 | 0.0 | 173.1 | 5.5e-15 | 1.0e-11 | 44.3 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 8 | LRR_1 | 198 | 218 | 5.2e-33 | 107.9 | 0.00016 | 0.29 | 11.3 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 8 | LRR_7 | 198 | 213 | 2.9e-24 | 80.8 | 0.00027 | 0.5 | 10.7 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 8 | LRR_6 | 219 | 237 | 9.9e-12 | 43.6 | 0.0001 | 0.19 | 11.8 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 6 | LRR_4 | 220 | 256 | 0.0 | 193.4 | 3.6e-10 | 6.6e-07 | 28.8 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 6 | LRR_8 | 220 | 278 | 0.0 | 173.1 | 5.0e-13 | 9.2e-10 | 38.1 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 9 | LRR_1 | 220 | 242 | 5.2e-33 | 107.9 | 2.5e-05 | 0.047 | 13.7 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 9 | LRR_7 | 220 | 234 | 2.9e-24 | 80.8 | 0.00083 | 1.5 | 9.3 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 9 | LRR_6 | 242 | 256 | 9.9e-12 | 43.6 | 0.086 | 160.0 | 2.8 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 7 | LRR_8 | 244 | 300 | 0.0 | 173.1 | 2.8e-09 | 5.3e-06 | 26.1 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 10 | LRR_7 | 244 | 259 | 2.9e-24 | 80.8 | 0.013 | 24.0 | 5.7 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 10 | LRR_1 | 245 | 261 | 5.2e-33 | 107.9 | 0.00066 | 1.2 | 9.4 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 7 | LRR_4 | 266 | 304 | 0.0 | 193.4 | 3.7e-08 | 6.9e-05 | 22.3 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 10 | LRR_6 | 267 | 280 | 9.9e-12 | 43.6 | 0.26 | 480.0 | 1.3 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 8 | LRR_8 | 267 | 315 | 0.0 | 173.1 | 9.2e-06 | 0.017 | 14.8 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 11 | LRR_7 | 267 | 282 | 2.9e-24 | 80.8 | 0.023 | 42.0 | 4.9 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 11 | LRR_1 | 268 | 283 | 5.2e-33 | 107.9 | 0.0041 | 7.5 | 7.0 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 11 | LRR_6 | 289 | 300 | 9.9e-12 | 43.6 | 8.0 | 15000.0 | -3.4 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 12 | LRR_7 | 289 | 303 | 2.9e-24 | 80.8 | 4.3 | 8000.0 | -1.9 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 12 | LRR_1 | 290 | 307 | 5.2e-33 | 107.9 | 0.25 | 470.0 | 1.5 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 9 | LRR_8 | 364 | 379 | 0.0 | 173.1 | 2.8 | 5100.0 | -2.7 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 10 | LRR_8 | 389 | 443 | 0.0 | 173.1 | 3.4e-06 | 0.0063 | 16.2 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 12 | LRR_6 | 390 | 401 | 9.9e-12 | 43.6 | 0.86 | 1600.0 | -0.3 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 8 | LRR_4 | 390 | 404 | 0.0 | 193.4 | 0.04 | 74.0 | 3.1 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 13 | LRR_7 | 390 | 403 | 2.9e-24 | 80.8 | 0.045 | 84.0 | 4.0 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 13 | LRR_1 | 391 | 405 | 5.2e-33 | 107.9 | 0.014 | 26.0 | 5.3 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 9 | LRR_4 | 412 | 442 | 0.0 | 193.4 | 7.8e-06 | 0.015 | 14.9 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 13 | LRR_6 | 413 | 423 | 9.9e-12 | 43.6 | 0.042 | 78.0 | 3.8 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 14 | LRR_1 | 413 | 430 | 5.2e-33 | 107.9 | 0.02 | 37.0 | 4.8 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 14 | LRR_7 | 413 | 426 | 2.9e-24 | 80.8 | 0.13 | 240.0 | 2.7 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 15 | LRR_1 | 435 | 447 | 5.2e-33 | 107.9 | 0.28 | 520.0 | 1.4 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 15 | LRR_7 | 435 | 443 | 2.9e-24 | 80.8 | 0.49 | 910.0 | 0.9 |
| pfu_aug2.0_887.1_24494.t1 | 11 | 11 | LRR_8 | 460 | 512 | 0.0 | 173.1 | 3.8e-08 | 7.0e-05 | 22.4 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 14 | LRR_6 | 480 | 492 | 9.9e-12 | 43.6 | 0.0036 | 6.7 | 7.1 |
| pfu_aug2.0_887.1_24494.t1 | 10 | 10 | LRR_4 | 480 | 515 | 0.0 | 193.4 | 2.0e-10 | 3.7e-07 | 29.6 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 16 | LRR_7 | 480 | 494 | 2.9e-24 | 80.8 | 0.044 | 82.0 | 4.1 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 16 | LRR_1 | 482 | 500 | 5.2e-33 | 107.9 | 0.00028 | 0.52 | 10.5 |
| pfu_aug2.0_887.1_24494.t1 | 15 | 15 | LRR_6 | 500 | 513 | 9.9e-12 | 43.6 | 0.065 | 120.0 | 3.2 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 17 | LRR_1 | 503 | 514 | 5.2e-33 | 107.9 | 2.4 | 4500.0 | -1.5 |
| pfu_aug2.0_887.1_24494.t1 | 17 | 17 | LRR_7 | 504 | 512 | 2.9e-24 | 80.8 | 6.0 | 11000.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_887.1_24494.t1 | gi|641774468|ref|XP_008170794.1| | PREDICTED: leucine-rich repeat-containing protein 40 isoform X2 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_887.1_24494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24494.t1 atgtcttatttgatacctgacacagtttggcgtttgaacattgatgttcccgaggaggctagaacagtgtcactggataa tacggaggacagatggtgggaacagactgaactgaccaagctgatccttgcctctaatctactgacagaactctctgagg acatcagtaacttccctgctctcacagtgttagatgtacatgacaatagattagaatctctgccagacaatctgaaaacc ctagagaacctagtcaagttagacatcagtcggaataaactgaaacaattaccagtcagtataacgtgccttagaagctt gaagagtttacatgcagagtataatgaaataacagaaatcagtgatgaaattggaaaccttagcagtctggaagactttg atatctccaacaacaagcttacccagttgccaaagaaagtgggtcacttatcacatgtgatgaagtttaatgtgtcaaat aatcagctgacatcacttcctccagaaataggttgtatggatgctttgagatattttgaggccactcataatcagatcac agagcttccagcagactttggtaatctcagacatctagaacaactttatttacgtcacaataaactaacggggattccac tgctggaaaactgcctaaatcttaaggagcttcatttaggtaacaatcagatcaaagagattacaccagaacatctcaaa catctctcatctgtcacagtcctggacatgcgagataataagctgacggtgctgccagacgagatagtatttcttacagg cttacagagaatagatctcaccaataatgatctgacagggctgccttacattttgggtactatcacatccctgaagtctg ttgtactagatggcaatccaatgaaatcaattaggagggatataatcatgagagggactgttgagttgaagaaataccta gtcagtagaatggaggcacctgaacctgtagtccaatcaaataagggtttacaaaacggctcaggaggagattctgggat cattggtggatctggagatggacttaaggctcatgacatacatcagaataaagctttagattttagcaaaaaaggtataa gtgagataccagacgatgtttgggatgtagccgttaagagtggtgtgaccaatgttaatctgaataggaacaattttaca caactcccttcaacggtcctactagtgagtgatactttgaaagagttatacctggggtttaacaaggtagcttcactgag ttcagatataggacttctgtttcacctgactactttggacttaagatttagcacattgccagctgtcttgtaccaatgta agaagatggagattatatttgccgatagcaacaagatcgataccatggatgccgctggcatacaaagtcttcctgtactc ggcacacttgatttacaaaacaacaacattggccaggtccctccagagcttggcaactgtactcagataaagtcccttat gctgaatggaaatgccttccgtaatcctcgaccagccatactggcaaaaggtacacctgccctactagagtacctacgaa gtaggatagtcacatga |
|
Protein
| Protein ID | pfu_aug2.0_887.1_24494.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_887.1_24494.t1 MSYLIPDTVWRLNIDVPEEARTVSLDNTEDRWWEQTELTKLILASNLLTELSEDISNFPALTVLDVHDNRLESLPDNLKT LENLVKLDISRNKLKQLPVSITCLRSLKSLHAEYNEITEISDEIGNLSSLEDFDISNNKLTQLPKKVGHLSHVMKFNVSN NQLTSLPPEIGCMDALRYFEATHNQITELPADFGNLRHLEQLYLRHNKLTGIPLLENCLNLKELHLGNNQIKEITPEHLK HLSSVTVLDMRDNKLTVLPDEIVFLTGLQRIDLTNNDLTGLPYILGTITSLKSVVLDGNPMKSIRRDIIMRGTVELKKYL VSRMEAPEPVVQSNKGLQNGSGGDSGIIGGSGDGLKAHDIHQNKALDFSKKGISEIPDDVWDVAVKSGVTNVNLNRNNFT QLPSTVLLVSDTLKELYLGFNKVASLSSDIGLLFHLTTLDLRFSTLPAVLYQCKKMEIIFADSNKIDTMDAAGIQSLPVL GTLDLQNNNIGQVPPELGNCTQIKSLMLNGNAFRNPRPAILAKGTPALLEYLRSRIVT |
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