Gene
| Gene Model ID | pfu_aug2.0_89.1_30172 |
|---|---|
| Locus | scaffold89.1 : 73874 ... 90285 : - |
| To GenomeBrowser | scaffold89.1:73874..90285 |
| Genes list of scaffold | scaffold89.1 |
| Synonym | pfu_aug1.0_267058.1_28765 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_89.1_30172.t2 | 1 | 1 | Arf | 12 | 100 | 2.8e-10 | 39.7 | 1.7e-13 | 3.1e-10 | 39.5 |
| pfu_aug2.0_89.1_30172.t2 | 1 | 1 | Ras | 15 | 97 | 3.9e-32 | 110.8 | 2.5e-35 | 4.7e-32 | 110.6 |
| pfu_aug2.0_89.1_30172.t2 | 1 | 1 | Miro | 15 | 99 | 4.2e-15 | 56.2 | 2.8e-18 | 5.1e-15 | 56.0 |
| pfu_aug2.0_89.1_30172.t2 | 1 | 1 | SRPRB | 15 | 93 | 8.6e-06 | 25.0 | 5.8e-09 | 1.1e-05 | 24.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_89.1_30172.t2 | gi|524881045|ref|XP_005097178.1| | PREDICTED: ras-related protein Rab-6A-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_89.1_30172.t2 | gi|114052691|ref|NP_001040270.1| | ras small monomeric GTPase Rab6 [Bombyx mori] | 0.0 |
| pfu_aug2.0_89.1_30172.t2 | gi|291235598|ref|XP_002737729.1| | PREDICTED: ras-related protein Rab-6A-like isoform X1 [Saccoglossus kowalevskii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_89.1_30172.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_89.1_30172.t1 atgtgtagcagccccggtccaaataactcaataacaataatgaaacgtttacaagagtttggcaagacatctctaattac cagatttatgtatgatagttttgacaatacgtatcaggctacaataggcattgactttctttcaaagactatgtatttag aagacagaactatacgactccagctgtgggacacggcagggcaggaacgattccgtagtttaataccaagttacatacga gactcctcagtagctgtagtagtatatgatataacaaaagaaggtgagagaaaagcaaaggaactgagtgtcatgtttat agagacaagcgctaaagctgggtataatgtaaaacaattatttaggagagttgctgcagccctcccaggtatggaacaaa cagagacaaggaaaggtgaaaatatagaacttcggccaacactggaccacgctgaacaagaacagccagggaacggatgc tcttgttga |
|
| Transcript ID | pfu_aug2.0_89.1_30172.t2 |
| Definition | - |
>pfu_aug2.0_89.1_30172.t2 atgagttcctcaggggaattcgggaacccattgaggaaattcaaactcgttttccttggggagcagagtgttggcaagac atctctaattaccagatttatgtatgatagttttgacaatacgtatcaggctacaataggcattgactttctttcaaaga ctatgtatttagaagacagaactatacgactccagctgtgggacacggcagggcaggaacgattccgtagtttaatacca agttacatacgagactcctcagtagctgtagtagtatatgatataacaagctacaataggcattga |
|
Protein
| Protein ID | pfu_aug2.0_89.1_30172.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_89.1_30172.t1 MCSSPGPNNSITIMKRLQEFGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIR DSSVAVVVYDITKEGERKAKELSVMFIETSAKAGYNVKQLFRRVAAALPGMEQTETRKGENIELRPTLDHAEQEQPGNGC SC |
|
| Protein ID | pfu_aug2.0_89.1_30172.t2 |
| Definition | - |
>pfu_aug2.0_89.1_30172.t2 MSSSGEFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIP SYIRDSSVAVVVYDITSYNRH |
|