Gene
| Gene Model ID | pfu_aug2.0_89.1_30190 |
|---|---|
| Locus | scaffold89.1 : 493604 ... 495275 : - |
| To GenomeBrowser | scaffold89.1:493604..495275 |
| Genes list of scaffold | scaffold89.1 |
| Synonym | pfu_aug1.0_14364.1_03488 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_89.1_30190.t1 | 1 | 1 | Ribosomal_L2_C | 2 | 50 | 1.6e-15 | 57.0 | 1.4e-19 | 2.1e-15 | 56.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_89.1_30190.t1 | gi|40643032|emb|CAD91443.1| | ribosomal protein L8 [Crassostrea gigas] | 0.0 |
| pfu_aug2.0_89.1_30190.t1 | gi|524869453|ref|XP_005091519.1| | PREDICTED: 60S ribosomal protein L8 isoform X3 [Aplysia californica] | 3.9937e-43 |
| pfu_aug2.0_89.1_30190.t1 | gi|390362742|ref|XP_796938.3| | 7.00005e-41 | |
| pfu_aug2.0_89.1_30190.t1 | gi|72020076|ref|XP_796001.1| | PREDICTED: 60S ribosomal protein L8 [Strongylocentrotus purpuratus] | 9.99995e-41 |
| pfu_aug2.0_89.1_30190.t1 | gi|240848569|ref|NP_001155749.1| | 60S ribosomal protein L8-like [Acyrthosiphon pisum] | 2.0e-40 |
Transcript
| Transcript ID | pfu_aug2.0_89.1_30190.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_89.1_30190.t1 atgctcaaggccggacgtgcatactttaaatataaggtcaagaggaactgctggcctaaagttcgtggtgtggctatgaa ccccgttgagcatccccacggaggtggtaaccatcaacatattggtaaagcttcaacagtcaggagagatacttctgctg gtagaaaggttggtttgattgctgcccgtcgtacaggacgtctgagaggttccaaacaagtcaccaagccatctgacaaa gaatag |
|
Protein
| Protein ID | pfu_aug2.0_89.1_30190.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_89.1_30190.t1 MLKAGRAYFKYKVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGKASTVRRDTSAGRKVGLIAARRTGRLRGSKQVTKPSDK E |
|