Gene
| Gene Model ID | pfu_aug2.0_890.1_01228 |
|---|---|
| Locus | scaffold890.1 : 136136 ... 144279 : + |
| To GenomeBrowser | scaffold890.1:136136..144279 |
| Genes list of scaffold | scaffold890.1 |
| Synonym | pfu_aug1.0_5748.1_52601 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_890.1_01228.t1 | 6 | 1 | LRR_8 | 69 | 127 | 1.9e-27 | 94.7 | 1.1e-07 | 0.00027 | 20.6 |
| pfu_aug2.0_890.1_01228.t1 | 4 | 1 | LRR_5 | 90 | 194 | 1.4e-08 | 34.5 | 1.5e-07 | 0.00037 | 20.1 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 1 | LRR_4 | 94 | 129 | 2.2e-16 | 59.0 | 3.5e-06 | 0.0086 | 15.6 |
| pfu_aug2.0_890.1_01228.t1 | 6 | 2 | LRR_8 | 136 | 176 | 1.9e-27 | 94.7 | 1.0e-09 | 2.5e-06 | 27.1 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 2 | LRR_4 | 138 | 178 | 2.2e-16 | 59.0 | 2.2e-06 | 0.0054 | 16.3 |
| pfu_aug2.0_890.1_01228.t1 | 6 | 3 | LRR_8 | 186 | 242 | 1.9e-27 | 94.7 | 0.00091 | 2.3 | 8.0 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 3 | LRR_4 | 187 | 201 | 2.2e-16 | 59.0 | 0.26 | 640.0 | 0.1 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 4 | LRR_4 | 214 | 244 | 2.2e-16 | 59.0 | 2.3e-06 | 0.0057 | 16.2 |
| pfu_aug2.0_890.1_01228.t1 | 6 | 4 | LRR_8 | 260 | 293 | 1.9e-27 | 94.7 | 6.9e-05 | 0.17 | 11.6 |
| pfu_aug2.0_890.1_01228.t1 | 4 | 2 | LRR_5 | 274 | 286 | 1.4e-08 | 34.5 | 3.7 | 9200.0 | -3.8 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 5 | LRR_4 | 278 | 294 | 2.2e-16 | 59.0 | 0.012 | 30.0 | 4.3 |
| pfu_aug2.0_890.1_01228.t1 | 4 | 3 | LRR_5 | 306 | 376 | 1.4e-08 | 34.5 | 9.3e-08 | 0.00023 | 20.8 |
| pfu_aug2.0_890.1_01228.t1 | 6 | 5 | LRR_8 | 312 | 369 | 1.9e-27 | 94.7 | 5.2e-14 | 1.3e-10 | 40.8 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 6 | LRR_4 | 312 | 350 | 2.2e-16 | 59.0 | 2.5e-08 | 6.2e-05 | 22.5 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 7 | LRR_4 | 333 | 370 | 2.2e-16 | 59.0 | 1.3e-05 | 0.032 | 13.8 |
| pfu_aug2.0_890.1_01228.t1 | 6 | 6 | LRR_8 | 359 | 389 | 1.9e-27 | 94.7 | 0.013 | 33.0 | 4.3 |
| pfu_aug2.0_890.1_01228.t1 | 8 | 8 | LRR_4 | 383 | 391 | 2.2e-16 | 59.0 | 0.047 | 120.0 | 2.5 |
| pfu_aug2.0_890.1_01228.t1 | 4 | 4 | LRR_5 | 452 | 468 | 1.4e-08 | 34.5 | 0.63 | 1600.0 | -1.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_890.1_01228.t1 | gi|676468619|ref|XP_009058267.1| | hypothetical protein LOTGIDRAFT_163508 [Lottia gigantea] | 3.0e-19 |
| pfu_aug2.0_890.1_01228.t1 | gi|657582939|ref|XP_008295551.1| | PREDICTED: slit homolog 3 protein-like [Stegastes partitus] | 1.0e-14 |
| pfu_aug2.0_890.1_01228.t1 | gi|658847690|ref|XP_008406345.1| | PREDICTED: uncharacterized protein LOC103464185 [Poecilia reticulata] | 3.0e-14 |
| pfu_aug2.0_890.1_01228.t1 | gi|617402594|ref|XP_007552843.1| | PREDICTED: carboxypeptidase N subunit 2-like [Poecilia formosa] | 9.0e-13 |
| pfu_aug2.0_890.1_01228.t1 | gi|556956238|ref|XP_005989430.1| | PREDICTED: leucine-rich repeat-containing protein 15 [Latimeria chalumnae] | 1.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_890.1_01228.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_890.1_01228.t1 atggataacaagctattgcttttcttaatttgtgtatcatctaatgtggtgacggaaatcagaggagttaaagaacatac taaagcttgtcactgtgaacctaaagacaccgagaaaacaacttggttggaatgttccgatgttgaccaatatttccgta tcaccaaagagaatactgcaaattgttcacattacaagccgaaccatctagtgattactaatagcgatattccaactcta acagcagaattctttggaataatagcttgcgatcattttgaagtagtcagtttttcttcatgtggcatacgtaatataac agctaatgcattttcaaatttcacacgcttgaaaagcttgattctaagagataatgagttaacagaaaatacactgacag aaggatcacatataacttctctacagctgtctgattgtggaatagaatatatcgaaaccgatttcttacgatggttaccg aatctaaagaagataagcctcaataataatgcattacacgggataaactttctcgcggtacaaaaggacctatgtcgttt acatgatgtacagataatgtacaattctatcagtaaccttgatttgtttcaacgtgaatcaacaaaaccatgcattcagt ctattgaaagattatcattgactggaaatccagtagaatccctcgtccctgtgaatagtttgagaaaccttagtttttta tatgctcaacgcataccgtgcaatgtcaaaagccaatttcctgtattcaatactcctcttgaagccttatacttggacga gggcaatttcagttgctggagaaaagacatgttttcaagtttgaaacaattagaaatcttaagtctaaaagggacgaatt ttgcgcatgcacctttagattttatcatacaactgttctccgaacttgatgttgaaacattgatattgaagaatgcaggt ttacggattataccagatcatatgttcagaaatatgacgtcattgaaaaatcttgatttaagtgacaactcaatatcctc atggagtacaaatacttttagtggaccccaactattggtcagtgtattactgaataacaacaacataagcgttattgcaa aaaactcacttccatcggtgaaccattcactggatctttctaacaatccttttctatgctcttgcgttcttgttgacttc cgtctatactttgaacatcacaaagacattttcatgagagatcccgttggcacttataaatgtgctaagccactgcgatg gaaagagatagatttgaagtccttccgtccagaatacacagactgcaatccttttaacccctatgtcattgtagcattct gtacgtgtgcttctctcatttttattaccattgtggtgaatgtcatttctgcttgtcgagagaggaatgccacaacaatt catatgattagaacgttaagaagaaatgtgtatcacagcttggacgaaaatactagtcacgagtattaa |
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Protein
| Protein ID | pfu_aug2.0_890.1_01228.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_890.1_01228.t1 MDNKLLLFLICVSSNVVTEIRGVKEHTKACHCEPKDTEKTTWLECSDVDQYFRITKENTANCSHYKPNHLVITNSDIPTL TAEFFGIIACDHFEVVSFSSCGIRNITANAFSNFTRLKSLILRDNELTENTLTEGSHITSLQLSDCGIEYIETDFLRWLP NLKKISLNNNALHGINFLAVQKDLCRLHDVQIMYNSISNLDLFQRESTKPCIQSIERLSLTGNPVESLVPVNSLRNLSFL YAQRIPCNVKSQFPVFNTPLEALYLDEGNFSCWRKDMFSSLKQLEILSLKGTNFAHAPLDFIIQLFSELDVETLILKNAG LRIIPDHMFRNMTSLKNLDLSDNSISSWSTNTFSGPQLLVSVLLNNNNISVIAKNSLPSVNHSLDLSNNPFLCSCVLVDF RLYFEHHKDIFMRDPVGTYKCAKPLRWKEIDLKSFRPEYTDCNPFNPYVIVAFCTCASLIFITIVVNVISACRERNATTI HMIRTLRRNVYHSLDENTSHEY |
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