Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_890.1_01229
Locus scaffold890.1 : 163806 ... 165976 : +
To GenomeBrowser scaffold890.1:163806..165976
Genes list of scaffold scaffold890.1
Synonym pfu_aug1.0_50465.1_63380

Manual annotation
Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_890.1_01229.t1 gi|736250921|ref|XP_010788008.1| PREDICTED: LOW QUALITY PROTEIN: IgGFc-binding protein [Notothenia coriiceps] 4.0e-27
pfu_aug2.0_890.1_01229.t1 gi|734619301|ref|XP_010737445.1| PREDICTED: IgGFc-binding protein [Larimichthys crocea] 1.0e-26
pfu_aug2.0_890.1_01229.t1 gi|432909116|ref|XP_004078119.1| PREDICTED: IgGFc-binding protein [Oryzias latipes] 4.0e-24
pfu_aug2.0_890.1_01229.t1 gi|637334669|ref|XP_008115306.1| PREDICTED: IgGFc-binding protein [Anolis carolinensis] 1.0e-22
pfu_aug2.0_890.1_01229.t1 gi|637334657|ref|XP_008115301.1| PREDICTED: IgGFc-binding protein [Anolis carolinensis] 2.0e-22

Transcript
Transcript IDpfu_aug2.0_890.1_01229.t1
Definition-
>pfu_aug2.0_890.1_01229.t1
atgggtacagaatttatatttgcaattcctgcaaattataataacctcgcctacgtcattcagatttacgtcgtatcaaa
tgaagctgtatttagtggcactgtgactacgccatataacaacttcttgacccatttttcaacaacatcggggaatgcaa
ctatttctctacccacttatctaatgctgaaggaaggaaaatcaaggaaagcaatagaaataagaacatcaaaacctgta
tctgtttatgcatttgatcattatcgtggaacatcaggagaaggtattatcgtctatcccaagaaataccttggatctga
ttacatcgcgagttcaagagtgccgtatcaggatgcatttctggcggtgataggaacaatgaacgatacacaggtaaaaa
tcaccattcgttctaccgcttcagtctcttataatggaaggtcgtaccgtaacggagaaaccatagtcacgaccttatac
gataaggacacactacaattattttcatcctcagacttgtcaggtactagggtacaaagctcaaaacctgtcgctgtctt
gtcaggaaacaaatgctttgatactagagaaacagggtgcagtcaactggctgagtacctcattcctgtcaataaatgcg
ggaatcgatacattctaccaccaatgattggattcaacaggacattgaaaatatttcccactttcatcaacaggacagac
gtacatatttatggaaataatcgccttgaaaatcattcgttaagtaatagttatgtcctggaaataccatccgatacatc
tgcgctcttggcactgatttcaagccaacccgtttgtctttttatctcttcttttcttggtaaaggaagttatgcctcag
catatctaacacaggtgccatcacttgatcaatatggaaatgaaattgtaattcctagaccaacttttgaagattttgat
aactatgtttctataatagctcccacgagttcactatcaaatttgagaatcgataattctaccataagtgcaagtactca
aaatataaccttggataatatttcgtactcagcattttccttgcaactaaataaaatgaccaaatatgagcctgtgtact
atatcaggagtattttgagccaggatgcatttggggccatagcatatggaaatattccggatgaatcttacggatatcct
gcaactcttatcttttga

Protein
Protein IDpfu_aug2.0_890.1_01229.t1
Definition-
>pfu_aug2.0_890.1_01229.t1
MGTEFIFAIPANYNNLAYVIQIYVVSNEAVFSGTVTTPYNNFLTHFSTTSGNATISLPTYLMLKEGKSRKAIEIRTSKPV
SVYAFDHYRGTSGEGIIVYPKKYLGSDYIASSRVPYQDAFLAVIGTMNDTQVKITIRSTASVSYNGRSYRNGETIVTTLY
DKDTLQLFSSSDLSGTRVQSSKPVAVLSGNKCFDTRETGCSQLAEYLIPVNKCGNRYILPPMIGFNRTLKIFPTFINRTD
VHIYGNNRLENHSLSNSYVLEIPSDTSALLALISSQPVCLFISSFLGKGSYASAYLTQVPSLDQYGNEIVIPRPTFEDFD
NYVSIIAPTSSLSNLRIDNSTISASTQNITLDNISYSAFSLQLNKMTKYEPVYYIRSILSQDAFGAIAYGNIPDESYGYP
ATLIF

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495