Gene
| Gene Model ID | pfu_aug2.0_892.1_07987 |
|---|---|
| Locus | scaffold892.1 : 21187 ... 48655 : - |
| To GenomeBrowser | scaffold892.1:21187..48655 |
| Genes list of scaffold | scaffold892.1 |
| Synonym | pfu_aug1.0_21713.1_69438 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| atp-binding cassette sub-family d member 4 isoform x1 | GO:0000166 GO:0006810 GO:0008152 GO:0016887 GO:0044425 GO:0044763 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_892.1_07987.t1 | 2 | 1 | ABC_membrane_2 | 2 | 30 | 1.1e-38 | 132.9 | 0.014 | 16.0 | 4.4 |
| pfu_aug2.0_892.1_07987.t1 | 2 | 2 | ABC_membrane_2 | 35 | 186 | 1.1e-38 | 132.9 | 6.79994e-41 | 7.7e-38 | 130.2 |
| pfu_aug2.0_892.1_07987.t1 | 1 | 1 | ABC_tran | 297 | 444 | 6.9e-17 | 62.0 | 1.2e-19 | 1.3e-16 | 61.1 |
| pfu_aug2.0_892.1_07987.t1 | 1 | 1 | AAA_16 | 304 | 375 | 4.7e-06 | 26.7 | 6.8e-09 | 7.7e-06 | 26.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_892.1_07987.t1 | gi|676458805|ref|XP_009055096.1| | hypothetical protein LOTGIDRAFT_215742 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_892.1_07987.t1 | gi|524911293|ref|XP_005110512.1| | PREDICTED: ATP-binding cassette sub-family D member 4-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_892.1_07987.t1 | gi|733889974|ref|XP_010710014.1| | PREDICTED: ATP-binding cassette sub-family D member 4 isoform X1 [Meleagris gallopavo] | 0.0 |
| pfu_aug2.0_892.1_07987.t1 | gi|260831242|ref|XP_002610568.1| | hypothetical protein BRAFLDRAFT_275826 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_892.1_07987.t1 | gi|733889977|ref|XP_010710016.1| | PREDICTED: ATP-binding cassette sub-family D member 4 isoform X2 [Meleagris gallopavo] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_892.1_07987.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_892.1_07987.t1 atggatatagacagactttgtaacagttttagtttgatgtttgctcctctaattctctcaccttttaccattgcttatta tctctacaaaagtgttcaaagagaccagaggataactatggatatagacagactttgtaacagttttagtttgatgtttg ctcctctaattctctccccttttaccattgcctattacctctacaaaagtgttcaaagcaccggttatttgggaccagta ggtgttatatcgttcttctttgttgccacggtgatcaataaattcctgatgtcaccagttgtggattatgtatttaaaag agaaaaaatggagggaaatttcaggttcaaacatatgcagatgagagtaactgctgagtctgctgctttctatagagccg gcaaaatagagaaagccaaggcaaaccataaactactgaagttattaaaaacacaacaaaagttggtagcaagagagtat gcacttaacttttccatcaatatgtctgattacttggggagtatactgagttatgtactattagctgttcctatatttca tggtttatacgatggactttctccgtcagacctatcggttcttattagtaagaatgcttttgtgataatataccttataa acagttttaccagcctgatagatttgtcatctaaagtcacagatgttgctggcaatgctcacaggcagtctatagcatta tcacagctcaacattgtctctgacagctcaacaggggccgagaaccagtcaagagggacaggtaactccaaccagtcatc aggggcaggtaacctacaggcaccacagagggcgctaacagtcaacaaccttacatacagacctccaaagagcaaagata ttctttgcaaaagtctgactttccacatggagtctggtgtaaacattttagtgacgggggattcaggatgtggcaagagc tcactactccgtgtcatatgtggactatggccaaaagcaaatggtagcgtagatttgcatcagccatatgatccagggag cattctgtttcttcctcagaagccgtattttactgatggatccctcagacaacagatcatttatccactagacgaggcgg aatatgaaagtgtgtcaacagatgaagacaagatgacaacattattgacaaaagctggactggacaggctgttaatacgt acccagggaatagatgtcgatctggactggaactggtatgatgaactttcccctggagagatgcagagactgtcatttgt tcgtcttttctatcatcagccaccttttgcagtattagatgaagctacgagtcagataggacttgatgctgagaatgaga tgtatacaatgtgtggagagctgggtataacggtgttaagtgtaggacatcgagcctcgctcagacagtatcacaatatg gaacttatacttaaaaggggggataactggacacttcaacctatcactgatcagagtaatcatatagcagactatgacta g |
|
Protein
| Protein ID | pfu_aug2.0_892.1_07987.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_892.1_07987.t1 MDIDRLCNSFSLMFAPLILSPFTIAYYLYKSVQRDQRITMDIDRLCNSFSLMFAPLILSPFTIAYYLYKSVQSTGYLGPV GVISFFFVATVINKFLMSPVVDYVFKREKMEGNFRFKHMQMRVTAESAAFYRAGKIEKAKANHKLLKLLKTQQKLVAREY ALNFSINMSDYLGSILSYVLLAVPIFHGLYDGLSPSDLSVLISKNAFVIIYLINSFTSLIDLSSKVTDVAGNAHRQSIAL SQLNIVSDSSTGAENQSRGTGNSNQSSGAGNLQAPQRALTVNNLTYRPPKSKDILCKSLTFHMESGVNILVTGDSGCGKS SLLRVICGLWPKANGSVDLHQPYDPGSILFLPQKPYFTDGSLRQQIIYPLDEAEYESVSTDEDKMTTLLTKAGLDRLLIR TQGIDVDLDWNWYDELSPGEMQRLSFVRLFYHQPPFAVLDEATSQIGLDAENEMYTMCGELGITVLSVGHRASLRQYHNM ELILKRGDNWTLQPITDQSNHIADYD |
|