Gene
| Gene Model ID | pfu_aug2.0_892.1_07993 |
|---|---|
| Locus | scaffold892.1 : 235728 ... 245964 : + |
| To GenomeBrowser | scaffold892.1:235728..245964 |
| Genes list of scaffold | scaffold892.1 |
| Synonym | pfu_aug1.0_45554.1_63231 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| rna-binding protein 42-like isoform x1 | GO:0000166 GO:0002088 GO:0003723 GO:0005634 GO:0005737 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_892.1_07993.t1 | 2 | 1 | RRM_6 | 282 | 301 | 4.2e-09 | 36.2 | 0.62 | 3100.0 | -1.8 |
| pfu_aug2.0_892.1_07993.t1 | 1 | 1 | RRM_1 | 348 | 409 | 7.1e-14 | 51.1 | 2.6e-17 | 1.3e-13 | 50.3 |
| pfu_aug2.0_892.1_07993.t1 | 2 | 2 | RRM_6 | 348 | 408 | 4.2e-09 | 36.2 | 2.7e-12 | 1.3e-08 | 34.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_892.1_07993.t1 | gi|597801724|ref|XP_007242207.1| | PREDICTED: RNA-binding protein 42-like isoform X3 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_892.1_07993.t1 | gi|597801720|ref|XP_007242205.1| | PREDICTED: RNA-binding protein 42-like isoform X1 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_892.1_07993.t1 | gi|597801722|ref|XP_007242206.1| | PREDICTED: RNA-binding protein 42-like isoform X2 [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_892.1_07993.t1 | gi|554872919|ref|XP_005946396.1| | PREDICTED: RNA-binding protein 42-like [Haplochromis burtoni] | 0.0 |
| pfu_aug2.0_892.1_07993.t1 | gi|499041501|ref|XP_004571369.1| | PREDICTED: RNA-binding protein 42 [Maylandia zebra] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_892.1_07993.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_892.1_07993.t1 atggtaaacctctatagtgtgttcccacatagccataatttcctccatttgctagagttatctccctccttggataacaa ctcttggactttgtccatctcagccaatgaggatgatgattaccagccgccaaggaagatgccccgcccaggaggcggac cctcaaacacttcagattccaatatacccatctcagtattatcagccccgcctccaccgccgcccagtctactcagcaag gctccccctctccaagccccgcctcctcctccacctgccctcagaccaaacctctcatttgtccctccacagatacgcaa tagaccgcctccccctcctccgccaaggggcggaccacctaatcaaggaccgcctcctagagctccgcctccttatatgg ggccaccagggggagggccacctcctggtccacatggtcctggtccacacggtggaccgcatggtccttttccaccaaga ccaggtccattcccaggaggcccaaacatgatgccgccacgtggccctcccatgcctggaccacctggccctgcagggca ttttggagggccaagacctggccccattggaggtccaatgggtccagggccagcatatgggattagtactggggaggcac attcaatggcaaattttggacctgatggaacagctgagggagcacaaatattagagaaaccaaaagttgtgtattcttct gcgcctcaaattacaaagcctgaagagaagaagaagaaaaagaagaaaaaagtgaaagatggaacgttattagaggggga gggtagtatggagagttctacatcagggggaggtaactctgtcttacccacagaatctcagcctgtacaactactgaaag ctgtggagtcacaagaaattgtcaaacatgtcccagaggtagaacccgaagttgaagtcaaaaaacagaaaaaagacaag aaaaagaaaataatacgaacagcagctggtgaaacgtgggaagatacgtcattagacgactgggaaactgatgattttcg aatattctgcggtgatctaggaaatgaggtcacagatgaagtactagctcgagccttcagtaggtacccaacattcttaa aggccaaagtggtacgagacaagcggacaaacaagaccaaaggctatggctttgttagtttcagagatcctaatgacttt gtacaggccatgagggatatgaatgatgacagatgtatgccacaggccttcttctttaattag |
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Protein
| Protein ID | pfu_aug2.0_892.1_07993.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_892.1_07993.t1 MVNLYSVFPHSHNFLHLLELSPSLDNNSWTLSISANEDDDYQPPRKMPRPGGGPSNTSDSNIPISVLSAPPPPPPSLLSK APPLQAPPPPPPALRPNLSFVPPQIRNRPPPPPPPRGGPPNQGPPPRAPPPYMGPPGGGPPPGPHGPGPHGGPHGPFPPR PGPFPGGPNMMPPRGPPMPGPPGPAGHFGGPRPGPIGGPMGPGPAYGISTGEAHSMANFGPDGTAEGAQILEKPKVVYSS APQITKPEEKKKKKKKKVKDGTLLEGEGSMESSTSGGGNSVLPTESQPVQLLKAVESQEIVKHVPEVEPEVEVKKQKKDK KKKIIRTAAGETWEDTSLDDWETDDFRIFCGDLGNEVTDEVLARAFSRYPTFLKAKVVRDKRTNKTKGYGFVSFRDPNDF VQAMRDMNDDRCMPQAFFFN |
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