Genome browser

OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_893.1_11281
Locus scaffold893.1 : 137806 ... 174014 : +
To GenomeBrowser scaffold893.1:137806..174014
Genes list of scaffold scaffold893.1
Synonym pfu_aug1.0_83033.1_56618

Manual annotation
Annotation by Blast2GO
Annotation GO
doublesex- and mab-3-related transcription factor 2 GO:0005488 GO:0009790 GO:0050789

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_893.1_11281.t1 1 1 DM 7 53 5.2e-22 77.1 8.7e-25 2.2e-21 75.1
pfu_aug2.0_893.1_11281.t1 1 1 Astacin 522 713 4.3e-21 75.1 3.7e-24 9.0e-21 74.1
pfu_aug2.0_893.1_11281.t1 1 1 CUB 966 1077 2.6e-21 75.7 2.6e-24 6.5e-21 74.4

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_893.1_11281.t1 gi|676482714|ref|XP_009062790.1| hypothetical protein LOTGIDRAFT_235353 [Lottia gigantea] 0.0
pfu_aug2.0_893.1_11281.t1 gi|676434931|ref|XP_009047393.1| hypothetical protein LOTGIDRAFT_172278 [Lottia gigantea] 0.0
pfu_aug2.0_893.1_11281.t1 gi|676444050|ref|XP_009050301.1| hypothetical protein LOTGIDRAFT_238951 [Lottia gigantea] 0.0
pfu_aug2.0_893.1_11281.t1 gi|676488825|ref|XP_009064740.1| hypothetical protein LOTGIDRAFT_236211 [Lottia gigantea] 0.0
pfu_aug2.0_893.1_11281.t1 gi|676462554|ref|XP_009056306.1| hypothetical protein LOTGIDRAFT_232838 [Lottia gigantea] 0.0

Transcript
Transcript IDpfu_aug2.0_893.1_11281.t1
Definition-
>pfu_aug2.0_893.1_11281.t1
atgcccagacgactactcagaactcctaaatgtgcaaggtgtcgtaaccatggtgtggtatcgtgcctgaaaggtcacaa
gaaattttgtagatggcgcgactgtcagtgtccgaattgtctcctggtggtggagagacagcgagtgatggcggcccagg
tcgcactgagaagacaccaagcttcagaaacctcttcgaagggcggaaaacccgctgcaagtgatgaacacaagaaaatt
ttacagcgtagtctcaaagatctacagaaacattctctgtcacgtgacgtgatttcaggtttaagaacaaagctaagagt
tggatccagtaagtccgttgtgcctattttaaacgagcgcatgcgcaaacgacgatgttttgctgatcgagatcttgaca
ttgcaatgttcgaaagagaagaaaccttgtctacagatcacagagatgatgctttaattcggacaaacgtcacgagacct
attgtgaatcgtgtctgcacaagctatgacaaagattaccaaaggttccgtccacacaatgaccgatttgtcggtttctg
taccaactataatagtcatttctacaatcaaggatgtgtatttcctttgctcttccccagagtgccatcttcttaccccc
cactccatttccaacattcatacaatatatcagaaataaacactgctaacacgggtactaatgaggaaaatacatccata
ggtacatcaccaaagtctgcaacttcatcaccaccgaaaactgcaggaaatggcggtacaaaacatttgaaattttcagt
agaatcgatactggcaatatccgcttcgtacttggatatacttctatctttcgacgaaaacggccatttgaacacctcac
tgtatgacaagcgtgacgatttcagcttccacataactaacttccttttcatgagtagcaacattccgtcttctcttgct
tatggcgtttttatttctcagctgatacggtacgccagggcatgttccaaatatgaagatttcatcattagagccagacg
gcttgcaattagatgtctgatggcttcccatgccctggtacttttggcgtgtatcgtgatctccggtgcacagaaactac
ccggtcaaggtgatgttgtatctttcaagaaaggaaaatcagaaatgatagccaacggagtccatggatttaaatccaaa
gggaaattctacaagataatgggttacagagggtcacaaagactagctttccaaaaatttgaagaagaaagggactttgc
cgaagacatcaatgagcataaaacatcacacgaggaaaaactcttggaggaagaggatgaattcttttcttatgaaaaac
agagaaaaatagcaaaaaagaaaggtgtggatcctcagagggtagatatacctaaaaaggcacaacagtttgagattcaa
tatggtgttggaaaaacaaaacgtaaaagaaagaggaaatggtcgaaacgactacagcaaaatcagaagagaaaacgtcg
tcaaggaagaaagaagagatttgccttaaaagacgaggatcgatactggacaaacgctatagttccttacgttttcacgt
cagacatcaaagatgaagacattatggggaagttgagagcaatgagaaggttggagtattggacctgtgtgaggtttgtg
ccatggaccaaggatacacgagaagaatacggactggaccatgataactacctgaaacacatcaacaaagacgggttaga
caacttttgtttgatgcaatatagtactgtttcctcgtatatcattttaaaagatagtgcctgtttacatgagctgggtc
actctcttggtctgcaacatgagcaaaaaagtccacttcatgatgagtacatcagggtgaacgacgaaaacataataaaa
gagagacttggagaatatgaggaggatattaagggagatgggaagacgtttggatattatgacctaggagatcaaatgca
ctataaacgatttatgttttcgaagaattcgaagccgaccatgacgctgtatgacccacagatggaatatctacttttaa
gctctgatccacataattactatatgtttaaagaaataacgcagattcataaatgtgcagagatgcactgtgcagacttt
aaacaggaatgtgggaaagatggttacgtagcattcataagagggcggtgtcagtgtaggtgtccagaggggtttgatcc
agacaacggatgtagaacaaagtacaaaggagattcatcgttgttgaaactgaaatggcctgaagaatcatattctatgc
taaaaccaatagacggatgtcccacaggcttcaaagagggtatcatcaaacagacaatccgcgggacgggtacttcagac
atatatcatcttgactctgaaaacggcatgatatatttcactcataagttctgtacaaagccaaagaccactgagcaaga
agctacggcacagtggggaagaggacaatattgtatactaagttatggtggatcttgtccagatggatttaaagatggtg
tagtcggatttgacaacatgcaaaaacctgaggtattgaagcaccccattccagacagtcagcatgacaagaacctagtc
ctacatgtatgttgtcgtgaagatggcagctggaaggatcctctcatattacccacaaaagaagcatttgtcctgtttca
aaaaggggatgagtgtcaggaagtaaaagatatgatgtcatccagcgagtggttccttattgacaacgactttacaggac
ttgacaagatagaaggcctggtaccagagatagaagttatcagggcatccaagtattatataggaatttgttattactgg
ccaatcaactacaattgtggcggtgttatagaacttacagattccagaagagaaattaccatttcatcgccaaactttcc
gtctaattataataaaagacagcaatgtcactggagtataaagtcaccagttgggtctcatgtggagttggacttccaaa
gctttgacatagagctcagagaagacgattcgtgtggagattcgttagaagtccgtactggattaccgggacagctagga
ataaattactgtggtgatactttcaaaccaaccgttatgagtgagcagaattatcttggtcttattttcacaagtggtcc
agaagtgacaaagagaggatttaaagctaaactgtctgttattcgacgcctctgttatgataagttttacgattgctacc
aactacaacagacaaacgcccaattctgttctagtagtaaccatagtgccaagtttggttgtagaaagacgtgtggtttc
tgtgccaaaaggcattcgaaagcagttagtacagtgcgttgccggacaccagaagatataccagatgcagctcctataaa
acctctgaagtcaaaatataaagttggggaaaatgtgacgtacaaatagagaatgatttgtgctgatgcccatcccaact
gtgcaagaatattggagagggagcaaagtgcctgcatggcttatcccgagttttcctggcatttatgtcctcagtcatgc
gctgtatgtaaaagaggaccagagataaaatgtgcaagaccggtagatggacaaaatacagtggaacttaccggcaaaag
agaagtaactgtaggaagaatgttcgaatatcgatgtaagaaaggttacattcacagtgaaggaaacttacgtagagtgt
gtcttaaatctggcaaacttagtggtgatatcccgaaatgcatatccgaacactccattccaacagctaacaatgctata
gagctcagacagcggcgtcaggatggacgtgacggcaccgcttacgtaggactgaatgatgcacagaggatacacaaaaa
cggcctgctagtacgctggatgttctacagtatatatgacggtgaagtggcactacaagtgtggagaaaacttcccggga
gtggcaggaaaattaagtag

Protein
Protein IDpfu_aug2.0_893.1_11281.t1
Definition-
>pfu_aug2.0_893.1_11281.t1
MPRRLLRTPKCARCRNHGVVSCLKGHKKFCRWRDCQCPNCLLVVERQRVMAAQVALRRHQASETSSKGGKPAASDEHKKI
LQRSLKDLQKHSLSRDVISGLRTKLRVGSSKSVVPILNERMRKRRCFADRDLDIAMFEREETLSTDHRDDALIRTNVTRP
IVNRVCTSYDKDYQRFRPHNDRFVGFCTNYNSHFYNQGCVFPLLFPRVPSSYPPLHFQHSYNISEINTANTGTNEENTSI
GTSPKSATSSPPKTAGNGGTKHLKFSVESILAISASYLDILLSFDENGHLNTSLYDKRDDFSFHITNFLFMSSNIPSSLA
YGVFISQLIRYARACSKYEDFIIRARRLAIRCLMASHALVLLACIVISGAQKLPGQGDVVSFKKGKSEMIANGVHGFKSK
GKFYKIMGYRGSQRLAFQKFEEERDFAEDINEHKTSHEEKLLEEEDEFFSYEKQRKIAKKKGVDPQRVDIPKKAQQFEIQ
YGVGKTKRKRKRKWSKRLQQNQKRKRRQGRKKRFALKDEDRYWTNAIVPYVFTSDIKDEDIMGKLRAMRRLEYWTCVRFV
PWTKDTREEYGLDHDNYLKHINKDGLDNFCLMQYSTVSSYIILKDSACLHELGHSLGLQHEQKSPLHDEYIRVNDENIIK
ERLGEYEEDIKGDGKTFGYYDLGDQMHYKRFMFSKNSKPTMTLYDPQMEYLLLSSDPHNYYMFKEITQIHKCAEMHCADF
KQECGKDGYVAFIRGRCQCRCPEGFDPDNGCRTKYKGDSSLLKLKWPEESYSMLKPIDGCPTGFKEGIIKQTIRGTGTSD
IYHLDSENGMIYFTHKFCTKPKTTEQEATAQWGRGQYCILSYGGSCPDGFKDGVVGFDNMQKPEVLKHPIPDSQHDKNLV
LHVCCREDGSWKDPLILPTKEAFVLFQKGDECQEVKDMMSSSEWFLIDNDFTGLDKIEGLVPEIEVIRASKYYIGICYYW
PINYNCGGVIELTDSRREITISSPNFPSNYNKRQQCHWSIKSPVGSHVELDFQSFDIELREDDSCGDSLEVRTGLPGQLG
INYCGDTFKPTVMSEQNYLGLIFTSGPEVTKRGFKAKLSVIRRLCYDKFYDCYQLQQTNAQFCSSSNHSAKFGCRKTCGF
CAKRHSKAVSTVRCRTPEDIPDAAPIKPLKSKYKVGENVTYKXRMICADAHPNCARILEREQSACMAYPEFSWHLCPQSC
AVCKRGPEIKCARPVDGQNTVELTGKREVTVGRMFEYRCKKGYIHSEGNLRRVCLKSGKLSGDIPKCISEHSIPTANNAI
ELRQRRQDGRDGTAYVGLNDAQRIHKNGLLVRWMFYSIYDGEVALQVWRKLPGSGRKIK

  • MGU Home
  • Genome Projects
  • Information
  • Genome Browser
  • Blast Search
  • Keyword Search
  • Downloads

Gene ID:



Keyword:



  • Login

copyright © Marine Genomics Unit 2015
Okinawa Institute of Science and Technology
1919-1 Tancha, Onna-son, Kunigami-gun, Okinawa, Japan 904-0495