Gene
| Gene Model ID | pfu_aug2.0_895.1_17911 |
|---|---|
| Locus | scaffold895.1 : 30806 ... 92572 : + |
| To GenomeBrowser | scaffold895.1:30806..92572 |
| Genes list of scaffold | scaffold895.1 |
| Synonym | pfu_aug1.0_16597.1_68985 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| glutamate receptor kainate 2-like | GO:0005216 GO:0006810 GO:0016020 GO:0044699 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_895.1_17911.t1 | 1 | 1 | ANF_receptor | 25 | 324 | 1.2e-38 | 132.8 | 4.49957e-42 | 1.7e-38 | 132.3 |
| pfu_aug2.0_895.1_17911.t1 | 1 | 1 | Lig_chan-Glu_bd | 379 | 445 | 1.1e-19 | 70.1 | 6.9e-23 | 2.6e-19 | 68.9 |
| pfu_aug2.0_895.1_17911.t1 | 1 | 1 | SBP_bac_3 | 392 | 734 | 2.7e-22 | 79.1 | 1.3e-25 | 4.7e-22 | 78.3 |
| pfu_aug2.0_895.1_17911.t1 | 1 | 1 | Lig_chan | 495 | 770 | 0.0 | 185.1 | 0.0 | 0.0 | 184.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_895.1_17911.t1 | gi|676464991|ref|XP_009057099.1| | hypothetical protein LOTGIDRAFT_121144, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_895.1_17911.t1 | gi|642916527|ref|XP_008191079.1| | PREDICTED: glutamate receptor ionotropic, kainate 2-like [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_895.1_17911.t1 | gi|242022297|ref|XP_002431577.1| | glutamate receptor, ionotropic kainate 2 precursor, putative [Pediculus humanus corporis] | 0.0 |
| pfu_aug2.0_895.1_17911.t1 | gi|759043324|ref|XP_011330542.1| | PREDICTED: glutamate receptor ionotropic, kainate 2-like isoform X1 [Cerapachys biroi] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_895.1_17911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_895.1_17911.t1 atggaagcgaattgcttcgtaaaaataaccgatgattactatgaattatgcgttacatcctcttgtttcatttccgctgt atgtaatcaagtacaaaaaggcgccgtggcattttttggtcccgaaaatcctgaaattgcctccttcaccaactctcttt gctcatacctacacattccacatatagaattccgtgaggactttcatttacaaaacattcagtccggtttctccattaat atccatccaagcacggaagaactagcagaagcttatttagacgtcatcaaatcctacaacatgaaacacgtgctcatagt ctacggggagagacaaggacttttgaaaatgcagactttaatgcgaacaatcacaacagatttaacaaagaattttgcgc tacgacaaattgacttctcaaatgccagggaaatactaaaagaagccaagaggagaacgtggaggaacatcatcgtagat ttagaattgaaggatacagcagattttctcaaaatggctttacaggaaggaatgatagatccgtaccatcattacatttt aacaacattggacatcgagggattagatttggatgattataagtacaactatgtcaatatgactggcttccggatagtga accctaattctggttataccaagacagtgacagagggcatgtattactacgagatggaaacgaggcttgaactcctacat aaaaccaactacaacacaattccgtatcgttcagcattactgtttgacgccgtgttgctgtttgcaaaagctcttcaaaa tctagatgacgtcatagtgagaccaaacaacgcgtcatgtgacgaggactacgtgtggaagtcaggaaaaccactttacg acttcctaaaacaggcagaagtggatggcttaacgggtaaagttaaaattcaccagggaagaagaatgcagtttaacttg gacgtcatgcaactgaaagaaagtggcctcaaaaagactggaacatggagatttaaggaaggtgtcaatttctcttctac attcgaacacacgcatactttgtttgaaaataaaacactcaacattgggactgttctgaatcgtgtagtgctagtgacta caaaattggaagccccttatgtaatggaaagagacttggataaaggagtcgaccctaacacacttggaaacgagcgctat gagggtttctgtatagatctgctacaggaaattgctgccattgtgggattcaaatatagaattattcctaccaaggacgg acagtatgggaaactgaacaaaaagacgaaacagtggaatggacttaaagcggacattgcagtagcagccttgaccatca gctatttgagagagcaggcaatcgattttacaaaaccgtttttaaatcttgggattagcattttattcaaaacaccagag agaaaaaaaccaggaatattctcattcttaaaccctttagccatagaaatatggatatatgtggtgacagcatatgtggt agttagttttagtatatttgtattagcgaggttcagtccatatgagtggtacaaccctcacccgtgtaaccctgaaacag acacggtggagaacacattcggactgtctaatagtttttggttcacagtaggaactctcatgcagcagggttcagacgtg aatccacgcgcgatatccacacggatagtgggagccacatggtggttctttacattaatcatcatatcatcttacacggc aaacttggccgctttcttgactgttgagagaatggactctcccataactagtgcagacgatcttgccaagcaaacagaga tagagtatggatgttttaaaggtggcgccaccgaaactttcttcagggagtcccaaatacccacataccgtgctatgtgg aatttcatgaacagcagagaaaagagcgtgttcgtcgagtcgtctgcagaaggtgtggaacgtgtgaaaaaccaaggaaa ctacgcctatttgatggagtccacttctatagactacgtagtagagcagaactgtgatctgatgcaagttggtggccttt tggatgctaagggttatggcataggtactcccatgtcctctccacttcgagatcccatttccatggcaatattgagtcta caggaacaaggtaaaattcaggacctctacaacaaatggtggaaaggtacatctaagtgtatggcagagaagaaaaaagt ggaatctttagccaatgcactcactgtggataacataggtggaatttttgttgttttattgggtggacttgcaatagcaa tactcattgcattcctagaatttgtctggaaatcgaaacgaaacgccagggaagacagacaatccttatgctcagaaatg attcaagaattaaggtttgcagtcagatgccacggttccacgaaaaagccgcggaacaaaaagaaatgtacaaagtgcaa taaagaccataccggaaactcagtgacgtgtcctttgacagcggatatttccggggaatcccctgctaatggcatcattc atttacgcgagctcagaaaatcacccgtacccccgggaaaagagtttaaatttggagagggcggatacttacatgttgat tacagcgatacggaaacttag |
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Protein
| Protein ID | pfu_aug2.0_895.1_17911.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_895.1_17911.t1 MEANCFVKITDDYYELCVTSSCFISAVCNQVQKGAVAFFGPENPEIASFTNSLCSYLHIPHIEFREDFHLQNIQSGFSIN IHPSTEELAEAYLDVIKSYNMKHVLIVYGERQGLLKMQTLMRTITTDLTKNFALRQIDFSNAREILKEAKRRTWRNIIVD LELKDTADFLKMALQEGMIDPYHHYILTTLDIEGLDLDDYKYNYVNMTGFRIVNPNSGYTKTVTEGMYYYEMETRLELLH KTNYNTIPYRSALLFDAVLLFAKALQNLDDVIVRPNNASCDEDYVWKSGKPLYDFLKQAEVDGLTGKVKIHQGRRMQFNL DVMQLKESGLKKTGTWRFKEGVNFSSTFEHTHTLFENKTLNIGTVLNRVVLVTTKLEAPYVMERDLDKGVDPNTLGNERY EGFCIDLLQEIAAIVGFKYRIIPTKDGQYGKLNKKTKQWNGLKADIAVAALTISYLREQAIDFTKPFLNLGISILFKTPE RKKPGIFSFLNPLAIEIWIYVVTAYVVVSFSIFVLARFSPYEWYNPHPCNPETDTVENTFGLSNSFWFTVGTLMQQGSDV NPRAISTRIVGATWWFFTLIIISSYTANLAAFLTVERMDSPITSADDLAKQTEIEYGCFKGGATETFFRESQIPTYRAMW NFMNSREKSVFVESSAEGVERVKNQGNYAYLMESTSIDYVVEQNCDLMQVGGLLDAKGYGIGTPMSSPLRDPISMAILSL QEQGKIQDLYNKWWKGTSKCMAEKKKVESLANALTVDNIGGIFVVLLGGLAIAILIAFLEFVWKSKRNAREDRQSLCSEM IQELRFAVRCHGSTKKPRNKKKCTKCNKDHTGNSVTCPLTADISGESPANGIIHLRELRKSPVPPGKEFKFGEGGYLHVD YSDTET |
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