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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_895.1_17912
Locus scaffold895.1 : 94611 ... 120525 : -
To GenomeBrowser scaffold895.1:94611..120525
Genes list of scaffold scaffold895.1
Synonym pfu_aug1.0_2932.1_44525

Manual annotation
Annotation by Blast2GO
Annotation GO
glutamate receptor kainate 2 isoform x1 GO:0016020

Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_895.1_17912.t2 1 1 ANF_receptor 14 422 0.0 168.0 0.0 0.0 167.2
pfu_aug2.0_895.1_17912.t2 1 1 SBP_bac_3 464 824 4.3e-23 81.7 2.4e-26 7.1e-23 81.0
pfu_aug2.0_895.1_17912.t2 1 1 Lig_chan-Glu_bd 473 534 1.4e-07 31.3 1.4e-10 4.3e-07 29.8
pfu_aug2.0_895.1_17912.t2 1 1 Lig_chan 589 861 0.0 179.3 0.0 0.0 178.6

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_895.1_17912.t2 gi|325297076|ref|NP_001191543.1| glutamate receptor subunit protein GluR7 precursor [Aplysia californica] 0.0

Transcript
Transcript IDpfu_aug2.0_895.1_17912.t1
Definition-
>pfu_aug2.0_895.1_17912.t1
atggagaaaactggtttatttgaaccagaaaacgttggtgctaagataacgttcagatggacgatccagaagttaaacct
tcagggtgataacgacattgtcatagtttcaaatccaatagacattgccaaagatgacagcttccaagtttcaaaacgag
tatgtagtgacattgaggccggaggaaaggccgtttttggaccaacctcaaggacttccgttgcgcatgtgcaatctata
tgtaactttcttgcaattccacatataaagtttcattgggatccttatgacatcaatattggaacacgtgatccaggaaa
aactcatatgtcaattaatgtatatcctcattacataaaaataagtgaagcgtatcgtgatttaattaaccactggggat
ggacgacatttacagtgatttacgaagacaacgatggtttaataagattacaagaggttctaaagacatcgaaaaaagag
aacatgaaagtgacggtgcgaaaacttgataggaatccagacaactttataaagatgtttaaagacataaaactaaagaa
tgaaaaccgattcattatagactgtcatgtcagtaaggttggaacagttttacataaggcttctcaagtcaacgtcatca
gcgaatattttcattacctctttacaacattggatttagccatggtagatttggagaatttcaaacataatggtgccaac
atcacagcgctgaggatagtaaaccctgagaatcctatagtatcagcggtgacaggggagtggaagtacgagatgttcag
atctagtagaaacaaccaagtttctccactcagcgcaaatcagaaacaagtatcgaagtcgacatactttcctaagaatg
acaccgatgtgtttccgacggagaatgcgatgatgtatgatgctgtgatggtattcgatcaggcgttagagaggctgctc
aaagcccacaacatggactttgacaaaaagctgagctgtaatggcacagagacatggagtgagggatccagtctgttaaa
ctacatgaagacgatggattttgaaggcatgacaggacgagtccatttcggtgaatttggtctcaggaatgagttttcat
tggatattattgatatgacagtgaatggccttgaaaagtccggcgtctggtattctacccaaccggaaggaaagcgcatt
aatataacaaaatcacaagtcgaaagaaaagatgacaatctgagtaagattaaaggcaaaagactgaaagttatcactaa
aacggatgcgccttatgtatttgatgacaaggagacttatccggatgggaggataagatacacagggtttgcttttaaca
tttttgaccttatcgccaaaagactgaatttttcttacgacgtcgtaggaagtacaacgtcttatggaaattgtaatgat
cagggggtatgtgacggaatgatggactatctctataataagtcagttgatgtagccgttgccggaatgactattaccta
tgaaagagagaaatttgtggacttcaccaaaccattcctgaatctcggtataaccattctgtacaggaaaccaaaaccag
aaccaccagctttgttctcatttctgaaccctctccacctagacgtctggatctacatgatagcggggattctatgtgtc
agcttcatgttgtttgtcatagctcgattcactccttatgaatggtgtaatccccatccttgtgatcccaataccgacgt
ggtggaaaatcagttctccatcctcaacagtttatggttcacggttggagctcttatgcagcaaggttgtgagattgcac
ctagggcagtgtccacacgtatggtggcggtggtatggtggtttttcactctcatcatgatatcctcttacaccgccaat
ctggcggccttcttgacggtaaccaggatggtctcacccatagagagtgcagaggatctggctaaacaaaccaagatcaa
gtatggaacactagaaaatggcagtactcaaaagttttttgagcaatcacaatttccaacctttcagaaaatgtacagtt
ttatgaaggatcaaaaattgtttgtgagatcagctcaagaaggttataacaaggttctgaacgaagaatatgcatatttt
gctgaatccccttctatagaataccagatccaaaggaaatgtgatcttatgcagataggaaactggttaaattccatagg
atatggtattgcatttccaagaaattctccttggagggatcaaatatcaaatgaaattctgcggcttcaagaggcccagg
agatacagcggctcttcaacttgtggtggaaggagttagacggaggaggtaaatgtacagaggaaaccaagaagattagt
gctgccctcaccatagataacgtgggtggagtatttgtgctgttggtcggggggttgcctggcggggctgttagtggccc
tttttga
Transcript IDpfu_aug2.0_895.1_17912.t2
Definition-
>pfu_aug2.0_895.1_17912.t2
atggagaaaactggtttatttgaaccagaaaacgttggtgctaagataacgttcagatggacgatccagaagttaaacct
tcagggtgataacgacattgtcatagtttcaaatccaatagacattgccaaagatgacagcttccaagtttcaaaacgag
tatgtagtgacattgaggccggaggaaaggccgtttttggaccaacctcaaggacttccgttgcgcatgtgcaatctata
tgtaactttcttgcaattccacatataaagtttcattgggatccttatgacatcaatattggaacacgtgatccaggaaa
aactcatatgtcaattaatgtatatcctcattacataaaaataagtgaagcgtatcgtgatttaattaaccactggggat
ggacgacatttacagtgatttacgaagacaacgatggtttaataagattacaagaggttctaaagacatcgaaaaaagag
aacatgaaagtgacggtgcgaaaacttgataggaatccagacaactttataaagatgtttaaagacataaaactaaagaa
tgaaaaccgattcattatagactgtcatgtcagtaaggttggaacagttttacataaggcttctcaagtcaacgtcatca
gcgaatattttcattacctctttacaacattggatttagccatggtagatttggagaatttcaaacataatggtgccaac
atcacagcgctgaggatagtaaaccctgagaatcctatagtatcagcggtgacaggggagtggaagtacgagatgttcag
atctagtagaaacaaccaagtttctccactcagcgcaaatcagaaacaagttatataccacagagaaactctgacagaag
taaataaacatttgaaattttcacaagaagatgagatgaaaacgctgtatgtagatcttagccattgctacatagagggg
aaaaccggtcacagattcaaaaagtcgacatactttcctaagaatgacaccgatgtgtttccgacggagaatgcgatgat
gtatgatgctgtgatggtattcgatcaggcgttagagaggctgctcaaagcccacaacatggactttgacaaaaagctga
gctgtaatggcacagagacatggagtgagggatccagtctgttaaactacatgaagacgatggattttgaaggcatgaca
ggacgagtccatttcggtgaatttggtctcaggaatgagttttcattggatattattgatatgacagtgaatggccttga
aaagtccggcgtctggtattctacccaaccggaaggaaagcgcattaatataacaaaatcacaagtcgaaagaaaagatg
acaatctgagtaagattaaaggcaaaagactgaaagttatcactaaaacggatgcgccttatgtatttgatgacaaggag
acttatccggatgggaggataagatacacagggtttgcttttaacatttttgaccttatcgccaaaagactgaatttttc
ttacgacgtcgtaggaagtacaacgtcttatggaaattgtaatgatcagggggtatgtgacggaatgatggactatctct
ataataagtcagttgatgtagccgttgccggaatgactattacctatgaaagagagaaatttgtggacttcaccaaacca
ttcctgaatctcggtataaccattctgtacaggaaaccaaaaccagaaccaccagctttgttctcatttctgaaccctct
ccacctagacgtctggatctacatgatagcggggattctatgtgtcagcttcatgttgtttgtcatagctcgattcactc
cttatgaatggtgtaatccccatccttgtgatcccaataccgacgtggtggaaaatcagttctccatcctcaacagttta
tggttcacggttggagctcttatgcagcaaggttgtgagattgcacctagggcagtgtccacacgtatggtggcggtggt
atggtggtttttcactctcatcatgatatcctcttacaccgccaatctggcggccttcttgacggtaaccaggatggtct
cacccatagagagtgcagaggatctggctaaacaaaccaagatcaagtatggaacactagaaaatggcagtactcaaaag
ttttttgagcaatcacaatttccaacctttcagaaaatgtacagttttatgaaggatcaaaaattgtttgtgagatcagc
tcaagaaggttataacaaggttctgaacgaagaatatgcatattttgctgaatccccttctatagaataccagatccaaa
ggaaatgtgatcttatgcagataggaaactggttaaattccataggatatggtattgcatttccaagaaattctccttgg
agggatcaaatatcaaatgaaattctgcggcttcaagaggcccaggagatacagcggctcttcaacttgtggtggaagga
gttagacggaggaggtaaatgtacagaggaaaccaagaagattagtgctgccctcaccatagataacgtgggtggagtat
ttgtgctgttggtcggggggttgcctggcggggctgttagtggccctttttga

Protein
Protein IDpfu_aug2.0_895.1_17912.t1
Definition-
>pfu_aug2.0_895.1_17912.t1
MEKTGLFEPENVGAKITFRWTIQKLNLQGDNDIVIVSNPIDIAKDDSFQVSKRVCSDIEAGGKAVFGPTSRTSVAHVQSI
CNFLAIPHIKFHWDPYDINIGTRDPGKTHMSINVYPHYIKISEAYRDLINHWGWTTFTVIYEDNDGLIRLQEVLKTSKKE
NMKVTVRKLDRNPDNFIKMFKDIKLKNENRFIIDCHVSKVGTVLHKASQVNVISEYFHYLFTTLDLAMVDLENFKHNGAN
ITALRIVNPENPIVSAVTGEWKYEMFRSSRNNQVSPLSANQKQVSKSTYFPKNDTDVFPTENAMMYDAVMVFDQALERLL
KAHNMDFDKKLSCNGTETWSEGSSLLNYMKTMDFEGMTGRVHFGEFGLRNEFSLDIIDMTVNGLEKSGVWYSTQPEGKRI
NITKSQVERKDDNLSKIKGKRLKVITKTDAPYVFDDKETYPDGRIRYTGFAFNIFDLIAKRLNFSYDVVGSTTSYGNCND
QGVCDGMMDYLYNKSVDVAVAGMTITYEREKFVDFTKPFLNLGITILYRKPKPEPPALFSFLNPLHLDVWIYMIAGILCV
SFMLFVIARFTPYEWCNPHPCDPNTDVVENQFSILNSLWFTVGALMQQGCEIAPRAVSTRMVAVVWWFFTLIMISSYTAN
LAAFLTVTRMVSPIESAEDLAKQTKIKYGTLENGSTQKFFEQSQFPTFQKMYSFMKDQKLFVRSAQEGYNKVLNEEYAYF
AESPSIEYQIQRKCDLMQIGNWLNSIGYGIAFPRNSPWRDQISNEILRLQEAQEIQRLFNLWWKELDGGGKCTEETKKIS
AALTIDNVGGVFVLLVGGLPGGAVSGPF
Protein IDpfu_aug2.0_895.1_17912.t2
Definition-
>pfu_aug2.0_895.1_17912.t2
MEKTGLFEPENVGAKITFRWTIQKLNLQGDNDIVIVSNPIDIAKDDSFQVSKRVCSDIEAGGKAVFGPTSRTSVAHVQSI
CNFLAIPHIKFHWDPYDINIGTRDPGKTHMSINVYPHYIKISEAYRDLINHWGWTTFTVIYEDNDGLIRLQEVLKTSKKE
NMKVTVRKLDRNPDNFIKMFKDIKLKNENRFIIDCHVSKVGTVLHKASQVNVISEYFHYLFTTLDLAMVDLENFKHNGAN
ITALRIVNPENPIVSAVTGEWKYEMFRSSRNNQVSPLSANQKQVIYHRETLTEVNKHLKFSQEDEMKTLYVDLSHCYIEG
KTGHRFKKSTYFPKNDTDVFPTENAMMYDAVMVFDQALERLLKAHNMDFDKKLSCNGTETWSEGSSLLNYMKTMDFEGMT
GRVHFGEFGLRNEFSLDIIDMTVNGLEKSGVWYSTQPEGKRINITKSQVERKDDNLSKIKGKRLKVITKTDAPYVFDDKE
TYPDGRIRYTGFAFNIFDLIAKRLNFSYDVVGSTTSYGNCNDQGVCDGMMDYLYNKSVDVAVAGMTITYEREKFVDFTKP
FLNLGITILYRKPKPEPPALFSFLNPLHLDVWIYMIAGILCVSFMLFVIARFTPYEWCNPHPCDPNTDVVENQFSILNSL
WFTVGALMQQGCEIAPRAVSTRMVAVVWWFFTLIMISSYTANLAAFLTVTRMVSPIESAEDLAKQTKIKYGTLENGSTQK
FFEQSQFPTFQKMYSFMKDQKLFVRSAQEGYNKVLNEEYAYFAESPSIEYQIQRKCDLMQIGNWLNSIGYGIAFPRNSPW
RDQISNEILRLQEAQEIQRLFNLWWKELDGGGKCTEETKKISAALTIDNVGGVFVLLVGGLPGGAVSGPF

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