Gene
| Gene Model ID | pfu_aug2.0_9.1_29939 |
|---|---|
| Locus | scaffold9.1 : 175498 ... 179145 : + |
| To GenomeBrowser | scaffold9.1:175498..179145 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug1.0_40491.1_05134 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9.1_29939.t1 | 1 | 1 | Arf | 30 | 184 | 2.4e-08 | 33.4 | 5.4e-11 | 3.6e-08 | 32.8 |
| pfu_aug2.0_9.1_29939.t1 | 1 | 1 | Ras | 31 | 196 | 0.0 | 186.9 | 0.0 | 0.0 | 185.9 |
| pfu_aug2.0_9.1_29939.t1 | 1 | 1 | Miro | 31 | 153 | 7.9e-18 | 65.0 | 2.2e-20 | 1.5e-17 | 64.2 |
| pfu_aug2.0_9.1_29939.t1 | 1 | 1 | Gtr1_RagA | 31 | 185 | 1.9e-08 | 33.7 | 3.9e-11 | 2.6e-08 | 33.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9.1_29939.t1 | gi|91076508|ref|XP_973251.1| | PREDICTED: ras-related protein Rab-11A [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_9.1_29939.t1 | gi|156360921|ref|XP_001625271.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_9.1_29939.t1 | gi|543376425|ref|XP_005531421.1| | PREDICTED: ras-related protein Rab-11B isoform X2 [Pseudopodoces humilis] | 0.0 |
| pfu_aug2.0_9.1_29939.t1 | gi|54695940|gb|AAV38342.1| | RAB11B, member RAS oncogene family [Homo sapiens] | 0.0 |
| pfu_aug2.0_9.1_29939.t1 | gi|260820529|ref|XP_002605587.1| | hypothetical protein BRAFLDRAFT_266781 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_9.1_29939.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29939.t1 atgtcaaagccgtgcccaagctgtggacataaagggaggggtggggaagggcattgtcattatgaagaggatactcacga ttacctgaccaaagttgttttggtgggtgactctggggtcgggaaaaccaatttactgtctcggtttaccaggaactatt ttagtcttgaaaccagaactacgattggagttgaatttgcaacaaggagtctccacatcgatggtaaagagataaaggca cagatatgggacacggctgggcaagacagattcatgtcaattacaaaggctatgtttgtgtttctttcccctagttacta cagacatgcggtcggtgccctgttggtttacgatatcaccaagtatcagacgttccagaacctagagcgctggattgagg aactacgtcagttcacggacgacgacgtacttatcatgctggtgggtaacaaaactgatctacgtcatctcagagccgta ctcacggaggaagctaggcagtttgctgagaaacataagatttctttcatcgagacatcggctttggacagtagtaacgt agatgtcgctttccataatttactcacagaaaggaatgtgaatcactatgacgatgatgtatcacatatctga |
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Protein
| Protein ID | pfu_aug2.0_9.1_29939.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29939.t1 MSKPCPSCGHKGRGGEGHCHYEEDTHDYLTKVVLVGDSGVGKTNLLSRFTRNYFSLETRTTIGVEFATRSLHIDGKEIKA QIWDTAGQDRFMSITKAMFVFLSPSYYRHAVGALLVYDITKYQTFQNLERWIEELRQFTDDDVLIMLVGNKTDLRHLRAV LTEEARQFAEKHKISFIETSALDSSNVDVAFHNLLTERNVNHYDDDVSHI |
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