Gene
| Gene Model ID | pfu_aug2.0_9.1_29940 |
|---|---|
| Locus | scaffold9.1 : 180194 ... 223687 : - |
| To GenomeBrowser | scaffold9.1:180194..223687 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug1.0_40491.1_05134 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9.1_29940.t1 | 2 | 1 | zf-C3HC4 | 122 | 133 | 1.1e-06 | 28.1 | 0.046 | 98.0 | 2.7 |
| pfu_aug2.0_9.1_29940.t1 | 2 | 2 | zf-C3HC4 | 281 | 322 | 1.1e-06 | 28.1 | 1.7e-09 | 3.5e-06 | 26.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9.1_29940.t1 | gi|594102228|ref|XP_006074187.1| | PREDICTED: E3 ubiquitin-protein ligase RNF180 [Bubalus bubalis] | 6.0e-18 |
| pfu_aug2.0_9.1_29940.t1 | gi|350594348|ref|XP_003483883.1| | PREDICTED: E3 ubiquitin-protein ligase RNF180 isoform 2 [Sus scrofa] | 1.0e-17 |
| pfu_aug2.0_9.1_29940.t1 | gi|478497169|ref|XP_004422923.1| | PREDICTED: E3 ubiquitin-protein ligase RNF180 [Ceratotherium simum simum] | 2.0e-17 |
| pfu_aug2.0_9.1_29940.t1 | gi|734608156|ref|XP_010731314.1| | PREDICTED: E3 ubiquitin-protein ligase RNF180 [Larimichthys crocea] | 2.0e-17 |
| pfu_aug2.0_9.1_29940.t1 | gi|742148904|ref|XP_010843811.1| | PREDICTED: E3 ubiquitin-protein ligase RNF180 [Bison bison bison] | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_9.1_29940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29940.t1 atgaatacttatatcacttggtgtataactctgctcttggtaaatacgattgggggtagaggattcttcatcgatgatgg atatactcaaaatcaagattataaactccaaaacgaagattcacatatcccatataaaaggaactctgccagtcgaaaat atgattccaggagtgggttgtatgagttactaaggcaactagaaagttattctaaaacgtcaagacaattagttaattca gaatctatatacagcaataattacggaagagattccccatcttcagaggatggtacacagctgtttatttcacacgagga ggaagttctaccatcttggattttgaaattgattgaagagtccagttggttgaaaggaaagttgacttgtccccagtgta gtggtagagtgggctcctttgactttgtgtcatcatctaaatatacaactggcgatggttgtgttcctccgatcagagta ttacgttgtagagttgattgcatctcggggaaatcagtaagaggtgccattacaaagccagcacctcttcctataggaat ggtagagcaaggaccgagtggtactagatcagataataatacagaattatgtatcaaagaaaatccaacagctcaagaag agattcctcgtataaggagaagaaaagggagacatagaaaccatgaggatacagcagtattaccagctaatgatacagac agaactttgattgatgacaaagaaaatagattttctcatcttaatattgaggaaaatactggagaagctgattcagagga tgataacaatttggatatagtgataccagaggagcattgctgcccagtgtgtctggatatatactgtgaacctatgtact gtgttccatgtcaacatacattctgtgatccctgcttacgactcctggcacgacagacaccaaactggaccccatgtcct ctctgcagggttaccattaaaaaatgtctcaacaactttaatctaacaagcacgttgaaatcactgtacggagaggatta cctggagaggaaaatgaaggaaaggaagtcatgtgacaacaagtttcaccaattaaagttaccgagttatacagcttcac cagtacatttacagacctaccatacaaacctcagactacaaagacataacagagttcggaggaaggtggtcacggtggtg tgtgttatatttggcattctgatttgttttgcatttcccatgctctctaatgcttcaaaaatacttgatgcagcatttac acttataactctcatggatgtcataggttttattttctga |
|
Protein
| Protein ID | pfu_aug2.0_9.1_29940.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29940.t1 MNTYITWCITLLLVNTIGGRGFFIDDGYTQNQDYKLQNEDSHIPYKRNSASRKYDSRSGLYELLRQLESYSKTSRQLVNS ESIYSNNYGRDSPSSEDGTQLFISHEEEVLPSWILKLIEESSWLKGKLTCPQCSGRVGSFDFVSSSKYTTGDGCVPPIRV LRCRVDCISGKSVRGAITKPAPLPIGMVEQGPSGTRSDNNTELCIKENPTAQEEIPRIRRRKGRHRNHEDTAVLPANDTD RTLIDDKENRFSHLNIEENTGEADSEDDNNLDIVIPEEHCCPVCLDIYCEPMYCVPCQHTFCDPCLRLLARQTPNWTPCP LCRVTIKKCLNNFNLTSTLKSLYGEDYLERKMKERKSCDNKFHQLKLPSYTASPVHLQTYHTNLRLQRHNRVRRKVVTVV CVIFGILICFAFPMLSNASKILDAAFTLITLMDVIGFIF |
|