Gene
| Gene Model ID | pfu_aug2.0_9.1_29961 |
|---|---|
| Locus | scaffold9.1 : 624981 ... 626752 : + |
| To GenomeBrowser | scaffold9.1:624981..626752 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug1.0_1283.1_07867 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9.1_29961.t1 | 14 | 1 | LRR_1 | 16 | 34 | 8.0e-10 | 37.3 | 0.006 | 11.0 | 6.4 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 1 | LRR_8 | 16 | 34 | 5.0e-30 | 103.0 | 0.02 | 38.0 | 4.1 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 1 | LRR_4 | 17 | 27 | 2.0e-20 | 71.9 | 0.098 | 180.0 | 1.8 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 2 | LRR_4 | 87 | 95 | 2.0e-20 | 71.9 | 1.3 | 2500.0 | -1.8 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 2 | LRR_1 | 87 | 105 | 8.0e-10 | 37.3 | 0.063 | 120.0 | 3.3 |
| pfu_aug2.0_9.1_29961.t1 | 3 | 1 | LRR_5 | 88 | 138 | 5.6e-07 | 29.3 | 0.00072 | 1.3 | 8.7 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 2 | LRR_8 | 94 | 145 | 5.0e-30 | 103.0 | 2.1e-07 | 0.0004 | 20.0 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 3 | LRR_4 | 114 | 146 | 2.0e-20 | 71.9 | 6.2e-09 | 1.1e-05 | 24.8 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 3 | LRR_1 | 114 | 132 | 8.0e-10 | 37.3 | 0.00015 | 0.27 | 11.4 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 4 | LRR_1 | 134 | 145 | 8.0e-10 | 37.3 | 0.34 | 620.0 | 1.1 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 4 | LRR_4 | 173 | 190 | 2.0e-20 | 71.9 | 0.24 | 440.0 | 0.6 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 3 | LRR_8 | 185 | 244 | 5.0e-30 | 103.0 | 6.7e-08 | 0.00012 | 21.7 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 5 | LRR_1 | 186 | 208 | 8.0e-10 | 37.3 | 1.1 | 2000.0 | -0.4 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 5 | LRR_4 | 212 | 246 | 2.0e-20 | 71.9 | 4.6e-06 | 0.0086 | 15.6 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 6 | LRR_1 | 213 | 228 | 8.0e-10 | 37.3 | 1.6 | 3000.0 | -1.0 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 7 | LRR_1 | 235 | 248 | 8.0e-10 | 37.3 | 0.26 | 480.0 | 1.5 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 4 | LRR_8 | 261 | 297 | 5.0e-30 | 103.0 | 6.5e-05 | 0.12 | 12.1 |
| pfu_aug2.0_9.1_29961.t1 | 3 | 2 | LRR_5 | 262 | 299 | 5.6e-07 | 29.3 | 0.65 | 1200.0 | -0.9 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 6 | LRR_4 | 265 | 297 | 2.0e-20 | 71.9 | 9.4e-07 | 0.0017 | 17.8 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 8 | LRR_1 | 265 | 283 | 8.0e-10 | 37.3 | 0.029 | 53.0 | 4.4 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 9 | LRR_1 | 289 | 300 | 8.0e-10 | 37.3 | 1.0 | 1900.0 | -0.4 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 5 | LRR_8 | 314 | 370 | 5.0e-30 | 103.0 | 1.5e-13 | 2.8e-10 | 39.7 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 7 | LRR_4 | 315 | 350 | 2.0e-20 | 71.9 | 4.9e-09 | 9.1e-06 | 25.1 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 10 | LRR_1 | 315 | 332 | 8.0e-10 | 37.3 | 0.031 | 58.0 | 4.3 |
| pfu_aug2.0_9.1_29961.t1 | 3 | 3 | LRR_5 | 334 | 397 | 5.6e-07 | 29.3 | 1.6e-07 | 0.00029 | 20.5 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 11 | LRR_1 | 336 | 357 | 8.0e-10 | 37.3 | 0.00018 | 0.33 | 11.1 |
| pfu_aug2.0_9.1_29961.t1 | 6 | 6 | LRR_8 | 359 | 418 | 5.0e-30 | 103.0 | 6.4e-10 | 1.2e-06 | 28.1 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 8 | LRR_4 | 359 | 394 | 2.0e-20 | 71.9 | 0.0018 | 3.4 | 7.4 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 12 | LRR_1 | 360 | 381 | 8.0e-10 | 37.3 | 0.04 | 74.0 | 3.9 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 13 | LRR_1 | 384 | 399 | 8.0e-10 | 37.3 | 2.0 | 3700.0 | -1.2 |
| pfu_aug2.0_9.1_29961.t1 | 9 | 9 | LRR_4 | 385 | 420 | 2.0e-20 | 71.9 | 0.042 | 79.0 | 3.0 |
| pfu_aug2.0_9.1_29961.t1 | 14 | 14 | LRR_1 | 408 | 423 | 8.0e-10 | 37.3 | 1.6 | 3000.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9.1_29961.t1 | gi|632937798|ref|XP_007901121.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3 [Callorhinchus milii] | 6.0e-18 |
| pfu_aug2.0_9.1_29961.t1 | gi|24216020|ref|NP_713501.1| | 2.0e-17 |
Transcript
| Transcript ID | pfu_aug2.0_9.1_29961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29961.t1 atgccatcatttacatctgccgatagaattggtctcgattaccacatccttgatgcctccaataacagaatatcgtacct cacatcgggttcatttgcaaatgcannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnccatttacaaaagttattctcagcaataacgaactgaattcaagcactactagtataccagacaatgctttcaatgg ggacgagaaatctatttttgaacttgacttgagtagcaatcatctgaccagtctaccgctggctcttacacatctctcaa atataacaacgttagatgtcaccgataatcctatagcatattcaactgactttacatacaaagcaatgaaagcgatgggt gattcaatgagggactttcgatttggcagccaacaacttgaagagtggccaaagacacttaaccattttcagcagcttca gaaattggaagtggatggaatcagttctagacttcaagtcgttccaccagaaggttttcgaggatttgaaacaacactct tagaactaaacatacatcatactagtcttataggagtccccataggcatcagcaagctaaggaacctccaaacactgcat tttgatgacaatccttatgttcaaaaccgtggtgtactggtacagtccttcccaatctttggaaccagtcataaactgag agagctaactttaaacaacgatggtttgaccaaatttcctgaagtaataaaatacctccgaggccttcaaagtttaagcc tggatgaaaacatactagactttgtcagtgatgccaatctacttggaaacataactatcaattctttgacattgcgaaat tgtaagctgagtcgagttccaggagccctgtctgatctacagtacctaactacccttgacctgtctgaaaatgagatatc caccattgagaagaacgatctagctggcctacgccgtctgaatcatctgatagtggcgaatacaagcctgaagtatatct cagaggatgctttctctggattacatagtctactaagcctgaacttcaaaaattcaagtgtcactcaggttccttatgcc ttgaattttatctccccttgtcttcaagacatatacttagaaaaaaacaaactagactgcatgtgcgaaagtctggtatg gcttaagactcattcagaagcatgtgcctcacgaggtaccccaattaccattcatggggactgcgacacaatccacagca ctgtcactttttatgtcaacacgttcataccaaaatgcccggaatggaaggaaatccatcacatcgcaccgtacaattaa |
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Protein
| Protein ID | pfu_aug2.0_9.1_29961.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29961.t1 MPSFTSADRIGLDYHILDASNNRISYLTSGSFANAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XPFTKVILSNNELNSSTTSIPDNAFNGDEKSIFELDLSSNHLTSLPLALTHLSNITTLDVTDNPIAYSTDFTYKAMKAMG DSMRDFRFGSQQLEEWPKTLNHFQQLQKLEVDGISSRLQVVPPEGFRGFETTLLELNIHHTSLIGVPIGISKLRNLQTLH FDDNPYVQNRGVLVQSFPIFGTSHKLRELTLNNDGLTKFPEVIKYLRGLQSLSLDENILDFVSDANLLGNITINSLTLRN CKLSRVPGALSDLQYLTTLDLSENEISTIEKNDLAGLRRLNHLIVANTSLKYISEDAFSGLHSLLSLNFKNSSVTQVPYA LNFISPCLQDIYLEKNKLDCMCESLVWLKTHSEACASRGTPITIHGDCDTIHSTVTFYVNTFIPKCPEWKEIHHIAPYN |
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