Gene
| Gene Model ID | pfu_aug2.0_9.1_29962 |
|---|---|
| Locus | scaffold9.1 : 641011 ... 642438 : + |
| To GenomeBrowser | scaffold9.1:641011..642438 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug1.0_24069.1_47631 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9.1_29962.t1 | 10 | 1 | LRR_7 | 35 | 45 | 2.4e-10 | 38.8 | 2.4 | 4400.0 | -1.2 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 1 | LRR_1 | 37 | 47 | 9.0e-17 | 58.5 | 2.2 | 4200.0 | -1.4 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 1 | LRR_8 | 55 | 111 | 9.3e-30 | 102.1 | 1.5e-17 | 2.8e-14 | 52.5 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 1 | LRR_4 | 56 | 92 | 2.0e-30 | 103.8 | 1.8e-11 | 3.4e-08 | 32.9 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 2 | LRR_1 | 56 | 75 | 9.0e-17 | 58.5 | 2.7e-05 | 0.051 | 13.6 |
| pfu_aug2.0_9.1_29962.t1 | 2 | 1 | LRR_5 | 56 | 140 | 2.1e-08 | 33.9 | 1.5e-10 | 2.7e-07 | 30.3 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 1 | LRR_6 | 57 | 73 | 4.4e-15 | 53.9 | 0.00057 | 1.1 | 9.5 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 2 | LRR_7 | 58 | 67 | 2.4e-10 | 38.8 | 0.046 | 86.0 | 4.0 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 2 | LRR_6 | 75 | 90 | 4.4e-15 | 53.9 | 0.00029 | 0.54 | 10.4 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 3 | LRR_1 | 77 | 91 | 9.0e-17 | 58.5 | 0.0014 | 2.5 | 8.4 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 3 | LRR_7 | 77 | 89 | 2.4e-10 | 38.8 | 0.0036 | 6.8 | 7.3 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 2 | LRR_4 | 101 | 136 | 2.0e-30 | 103.8 | 6.5e-11 | 1.2e-07 | 31.1 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 2 | LRR_8 | 101 | 135 | 9.3e-30 | 102.1 | 2.7e-06 | 0.0049 | 16.5 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 4 | LRR_1 | 101 | 117 | 9.0e-17 | 58.5 | 0.00019 | 0.36 | 11.0 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 3 | LRR_6 | 101 | 113 | 4.4e-15 | 53.9 | 0.0034 | 6.3 | 7.1 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 4 | LRR_7 | 101 | 116 | 2.4e-10 | 38.8 | 0.0065 | 12.0 | 6.6 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 4 | LRR_6 | 121 | 137 | 4.4e-15 | 53.9 | 0.00057 | 1.1 | 9.5 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 5 | LRR_1 | 123 | 139 | 9.0e-17 | 58.5 | 0.0013 | 2.5 | 8.4 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 5 | LRR_7 | 123 | 135 | 2.4e-10 | 38.8 | 0.026 | 49.0 | 4.7 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 3 | LRR_8 | 166 | 210 | 9.3e-30 | 102.1 | 9.2e-08 | 0.00017 | 21.2 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 3 | LRR_4 | 172 | 183 | 2.0e-30 | 103.8 | 0.021 | 39.0 | 4.0 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 5 | LRR_6 | 172 | 182 | 4.4e-15 | 53.9 | 0.095 | 180.0 | 2.7 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 4 | LRR_8 | 174 | 231 | 9.3e-30 | 102.1 | 5.4e-09 | 1.0e-05 | 25.2 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 6 | LRR_1 | 174 | 195 | 9.0e-17 | 58.5 | 0.0042 | 7.8 | 6.9 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 6 | LRR_7 | 174 | 182 | 2.4e-10 | 38.8 | 0.28 | 520.0 | 1.6 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 7 | LRR_7 | 198 | 211 | 2.4e-10 | 38.8 | 0.67 | 1200.0 | 0.5 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 4 | LRR_4 | 199 | 235 | 2.0e-30 | 103.8 | 4.8e-08 | 8.9e-05 | 22.0 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 7 | LRR_1 | 199 | 217 | 9.0e-17 | 58.5 | 0.81 | 1500.0 | -0.1 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 6 | LRR_6 | 199 | 211 | 4.4e-15 | 53.9 | 0.21 | 390.0 | 1.6 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 7 | LRR_6 | 219 | 237 | 4.4e-15 | 53.9 | 1.8e-05 | 0.034 | 14.2 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 5 | LRR_8 | 222 | 279 | 9.3e-30 | 102.1 | 1.1e-10 | 2.0e-07 | 30.6 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 8 | LRR_1 | 222 | 244 | 9.0e-17 | 58.5 | 0.0044 | 8.1 | 6.9 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 8 | LRR_7 | 222 | 233 | 2.4e-10 | 38.8 | 0.04 | 74.0 | 4.2 |
| pfu_aug2.0_9.1_29962.t1 | 2 | 2 | LRR_5 | 241 | 295 | 2.1e-08 | 33.9 | 0.12 | 230.0 | 1.4 |
| pfu_aug2.0_9.1_29962.t1 | 5 | 5 | LRR_4 | 248 | 281 | 2.0e-30 | 103.8 | 3.9e-09 | 7.3e-06 | 25.4 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 9 | LRR_1 | 248 | 268 | 9.0e-17 | 58.5 | 0.11 | 200.0 | 2.6 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 9 | LRR_7 | 248 | 262 | 2.4e-10 | 38.8 | 0.069 | 130.0 | 3.5 |
| pfu_aug2.0_9.1_29962.t1 | 8 | 8 | LRR_6 | 268 | 279 | 4.4e-15 | 53.9 | 0.014 | 26.0 | 5.2 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 10 | LRR_7 | 269 | 279 | 2.4e-10 | 38.8 | 0.025 | 46.0 | 4.8 |
| pfu_aug2.0_9.1_29962.t1 | 10 | 10 | LRR_1 | 270 | 280 | 9.0e-17 | 58.5 | 0.073 | 140.0 | 3.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9.1_29962.t1 | gi|488530665|ref|XP_004457098.1| | 9.0e-16 | |
| pfu_aug2.0_9.1_29962.t1 | gi|542230275|ref|XP_005453794.1| | PREDICTED: chondroadherin-like [Oreochromis niloticus] | 3.0e-15 |
Transcript
| Transcript ID | pfu_aug2.0_9.1_29962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29962.t1 atgatgaagttttcgcttctgcttctccttttgaatttaatcacgttttcggaatcggtgacagttggctgttccaaatg tgtatgtgccggattgacgatgagctgtcgaggaatagggctaacatcgattccggactttgatgctggtctccgtttat ttaccagggttgatttgagtaacaattcaatcacaagtatcggcgccaatagtttccaaaacctacagtccttggtggag ttggacttgagtaacaattacatagcaacggtagatgcccatgcctttgatttagtgagaaacatcacaagcttgaatct tagaggaaatcagatgacaattcttccaaacctcatccaaatgaaaaagcttcaaattcttgatgtcagcgataatccaa tacgagataccgcgtttgatagtaatatcatgcgttccttgggttcaacgctgagggagtttcatttcggccataaaaca gtccttacgaattggcctcgtacaacagaccatttacaaagattagagaccttggatcttaatggcggtatgatatattt tattccacctaatagcttcagtggttttgaaagccgtctgaaaagtctcacaattcaatacacaaagctgacagcaactc cactcctatcatccctcaaattccttgaagaactccatcttgatcacaaccaattcggagactacggtgttttggaagca accttctcttcgcttagccttttgaaagtactttctctgaacgatgacgctctgacggagtttcctgccattttgaaaca tttaccaagtctgacatctctatctctaaatggcaatcnttacaataagaagacttacaaattctcgaaaatatatataa cagagttttctcatgagaattag |
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Protein
| Protein ID | pfu_aug2.0_9.1_29962.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29962.t1 MMKFSLLLLLLNLITFSESVTVGCSKCVCAGLTMSCRGIGLTSIPDFDAGLRLFTRVDLSNNSITSIGANSFQNLQSLVE LDLSNNYIATVDAHAFDLVRNITSLNLRGNQMTILPNLIQMKKLQILDVSDNPIRDTAFDSNIMRSLGSTLREFHFGHKT VLTNWPRTTDHLQRLETLDLNGGMIYFIPPNSFSGFESRLKSLTIQYTKLTATPLLSSLKFLEELHLDHNQFGDYGVLEA TFSSLSLLKVLSLNDDALTEFPAILKHLPSLTSLSLNGNXYNKKTYKFSKIYITEFSHEN |
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