Gene
| Gene Model ID | pfu_aug2.0_9.1_29968 |
|---|---|
| Locus | scaffold9.1 : 691308 ... 703321 : - |
| To GenomeBrowser | scaffold9.1:691308..703321 |
| Genes list of scaffold | scaffold9.1 |
| Synonym | pfu_aug1.0_1283.1_07874 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_9.1_29968.t1 | 5 | 1 | Cadherin | 36 | 68 | 5.1e-18 | 65.1 | 0.0078 | 29.0 | 5.0 |
| pfu_aug2.0_9.1_29968.t1 | 5 | 2 | Cadherin | 90 | 166 | 5.1e-18 | 65.1 | 3.8e-06 | 0.014 | 15.6 |
| pfu_aug2.0_9.1_29968.t1 | 5 | 3 | Cadherin | 183 | 275 | 5.1e-18 | 65.1 | 3.4e-07 | 0.0013 | 18.9 |
| pfu_aug2.0_9.1_29968.t1 | 5 | 4 | Cadherin | 357 | 374 | 5.1e-18 | 65.1 | 0.13 | 490.0 | 1.0 |
| pfu_aug2.0_9.1_29968.t1 | 5 | 5 | Cadherin | 393 | 477 | 5.1e-18 | 65.1 | 1.1e-12 | 4.1e-09 | 36.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_9.1_29968.t1 | gi|548413898|ref|XP_005741289.1| | PREDICTED: protocadherin Fat 2-like [Pundamilia nyererei] | 2.0e-26 |
| pfu_aug2.0_9.1_29968.t1 | gi|498989905|ref|XP_004552124.1| | PREDICTED: protocadherin Fat 2 [Maylandia zebra] | 3.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_9.1_29968.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29968.t1 atggctgcggtacgcctcggacgaattcctctgcacagtttggaggatgaaagaagccgtctcataattgatcctgcggt gtattgccgggcttctcccaccggactgaattacgtcagcgtccagacttacaccctcacagtgacgtgcaacgaaaaca tcgtcacatccaataccgctacatcatcactctctataaatatcgtacagaactccgcaccgtccattacaaatctacca gcttccacaagtatttccagcaccaccacaactagtggtacctttgtctttaacgtgacagccacggatcccgagggaga tcagctgtactttggaatgacatgtaatcctacaggatgtcctttccaaattcaagaatctggtcagattttagccactg ctgaccttaggggaaccacccagacgggatatgatatatctgtttcaattaacgacagccgaagcacggtggggcccagc atattgacagtgactataacagacatcaattcggcgcccactttttctaatcccttggtaacagccatatttatcaatga aaattctgcgttttccacgtctttatatgacctgaacgtgaatgacgccaatgtgggtgacacgcataccttcacagcga cttacacgccaacggatggcgtcaattattttataatcgactcatcaaatggtattatatcaacgtcatcaactaacaac atcaactatgagacgttaaaggccgccaacgctgaaactaccgttatgacggtaacggtatctgacggtcaggaaaccgc tacaacttccgtctccattaccgttgccgatatcaacgaggctcctgcattctccaagtcaaactaccttctcagtgctg atgaggctaattctggtacagcaattggtaatcctaacttcggtgtagtcgacccggatacaggggacactttgagttac gccctcggctgcagtgatttctcttacaattctgccacggagattgtgtcgtacgccatcaattatgacgtggacactgc gggtcatgcaacgtcacagacatgcgtggtcaccgtcaatgacggatccttgacgtccacggccacccttacaataaacg tcatcaacatcaacgacaatacgcccgtacttgacgcagcttcctatacgtatattgtagattcctctaccgcagtcggc gccactataggaacagttactgcaactgatgctgacgcttcaccatatggtactgtgacctacacgatagaccagacgtc gctaggtaaccagtattttaccatctccagtagcggcgccatcacaacggcaacgagtttatcatcttttgccgcgggtc agtccctcagtctgacggtatcggcaaccgacagtggtggattgtcggctacgtcacccattaccattgtcattcccgcc accaccactgcagggtcaacatcatcaacagaacgcaccttgtcattttttgacgactcgcgcaacattgcatggtttac cgctgccatggtattggccgttgtagtagttgccatagcaacctacatctgtttgaagaaattcagatataagaatatga aaaagcaatcaaaacttacagaggatcgacctgaggaatatccgggggatccttggaatccatggaaggtatgggagcat aaattgtag |
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Protein
| Protein ID | pfu_aug2.0_9.1_29968.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_9.1_29968.t1 MAAVRLGRIPLHSLEDERSRLIIDPAVYCRASPTGLNYVSVQTYTLTVTCNENIVTSNTATSSLSINIVQNSAPSITNLP ASTSISSTTTTSGTFVFNVTATDPEGDQLYFGMTCNPTGCPFQIQESGQILATADLRGTTQTGYDISVSINDSRSTVGPS ILTVTITDINSAPTFSNPLVTAIFINENSAFSTSLYDLNVNDANVGDTHTFTATYTPTDGVNYFIIDSSNGIISTSSTNN INYETLKAANAETTVMTVTVSDGQETATTSVSITVADINEAPAFSKSNYLLSADEANSGTAIGNPNFGVVDPDTGDTLSY ALGCSDFSYNSATEIVSYAINYDVDTAGHATSQTCVVTVNDGSLTSTATLTINVININDNTPVLDAASYTYIVDSSTAVG ATIGTVTATDADASPYGTVTYTIDQTSLGNQYFTISSSGAITTATSLSSFAAGQSLSLTVSATDSGGLSATSPITIVIPA TTTAGSTSSTERTLSFFDDSRNIAWFTAAMVLAVVVVAIATYICLKKFRYKNMKKQSKLTEDRPEEYPGDPWNPWKVWEH KL |
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