Gene
| Gene Model ID | pfu_aug2.0_90.1_00203 |
|---|---|
| Locus | scaffold90.1 : 1128 ... 8472 : + |
| To GenomeBrowser | scaffold90.1:1128..8472 |
| Genes list of scaffold | scaffold90.1 |
| Synonym | pfu_aug1.0_15458.1_46880 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein s7 | GO:0003735 GO:0005730 GO:0005925 GO:0006364 GO:0006412 GO:0016020 GO:0022627 GO:0042274 GO:0044822 GO:0070062 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_90.1_00203.t2 | 2 | 1 | Ribosomal_S7e | 7 | 118 | 0.0 | 357.2 | 0.0 | 0.0 | 158.2 |
| pfu_aug2.0_90.1_00203.t2 | 2 | 1 | AAA_24 | 66 | 98 | 8.3e-06 | 25.5 | 7.5e-05 | 0.22 | 11.0 |
| pfu_aug2.0_90.1_00203.t2 | 2 | 2 | Ribosomal_S7e | 134 | 259 | 0.0 | 357.2 | 0.0 | 0.0 | 205.1 |
| pfu_aug2.0_90.1_00203.t2 | 2 | 2 | AAA_24 | 155 | 212 | 8.3e-06 | 25.5 | 2.4e-05 | 0.072 | 12.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_90.1_00203.t2 | gi|675847390|ref|XP_009009255.1| | hypothetical protein HELRODRAFT_155580 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_90.1_00203.t2 | gi|532049260|ref|XP_005367403.1| | PREDICTED: 40S ribosomal protein S7-like [Microtus ochrogaster] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_90.1_00203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00203.t1 atgtattcggcgagcgctaaaattgttaagccccaaggggaaaagccagatgagtttgaatcttcaatctcacaggcatt gctggagttggaaatgaatagtgatctaaaagctcagctcagagaactgtatatcactggtgccaaggaaattgatgtgc agggaaagaaggccatcataatatttgtaccagtcccccagctgagggcatatcagaaaattcagacacgtctagttcgt gagttggaaaagaaattcagcggcaaacatgttgtattcattgcacagaggagaattttgcctaaacctacaagaaaaac caggagaaagaataagcagaaaagaccacgatcacgaactttgacctcagtacatgatgctatcttagaagaccttactt tccctgctgaaattgttggaaaaagaataaggataaagttagatggttccagacttgttaaggtccatcttgacaaaaac caacagacaaatattgaacataagatctcgccatggtctatactcccaccacattaa |
|
| Transcript ID | pfu_aug2.0_90.1_00203.t2 |
| Definition | - |
>pfu_aug2.0_90.1_00203.t2 atgtattcggcgagcgctaaaattgttaagccccaaggggaaaagccagatgagtttgaatcttcaatctcacaggcatt gctggagttggaaatgaatagtgatctaaaagctcagctcagagaactgtatatcactggtgccaaggaaattgatgtgc agggaaagaaggccatcataatatttgtaccagtcccccagctgagggcatatcagaaaattcagacacgtttagttcgt gagttggaaaagaaattcagcggcaaacatgttgtattcattgcacagaggagaattttgcctaaacctactagaaaaac caggagaaagaataagcagaagagaccacgatcagtatttgtactttatcataaatgtataagaatgaacaatggaaaac tttttacttacaatgaaattgatgtgcagggaaagaaggccatcataatatttgtaccagtcccccagctgagggcatat cagaaaattcagacacgtctagttcgtgagttggaaaagaaattcagcggcaaacatgttgtattcattgcacagaggag aattttgcctaaacctacaagaaaaaccaggagaaagaataagcagaaaagaccacgatcacgaactttgacctcagtac atgatgctatcttagaagaccttactttccctgctgaaattgttggaaaaagaataaggataaagttagatggttccaga cttgttaaggtccatcttgacaaaaaccaacagacaaatattgaacataagatctcgccatggtctatactcccaccaca ttaa |
|
Protein
| Protein ID | pfu_aug2.0_90.1_00203.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00203.t1 MYSASAKIVKPQGEKPDEFESSISQALLELEMNSDLKAQLRELYITGAKEIDVQGKKAIIIFVPVPQLRAYQKIQTRLVR ELEKKFSGKHVVFIAQRRILPKPTRKTRRKNKQKRPRSRTLTSVHDAILEDLTFPAEIVGKRIRIKLDGSRLVKVHLDKN QQTNIEHKISPWSILPPH |
|
| Protein ID | pfu_aug2.0_90.1_00203.t2 |
| Definition | - |
>pfu_aug2.0_90.1_00203.t2 MYSASAKIVKPQGEKPDEFESSISQALLELEMNSDLKAQLRELYITGAKEIDVQGKKAIIIFVPVPQLRAYQKIQTRLVR ELEKKFSGKHVVFIAQRRILPKPTRKTRRKNKQKRPRSVFVLYHKCIRMNNGKLFTYNEIDVQGKKAIIIFVPVPQLRAY QKIQTRLVRELEKKFSGKHVVFIAQRRILPKPTRKTRRKNKQKRPRSRTLTSVHDAILEDLTFPAEIVGKRIRIKLDGSR LVKVHLDKNQQTNIEHKISPWSILPPH |
|