Gene
| Gene Model ID | pfu_aug2.0_90.1_00207 |
|---|---|
| Locus | scaffold90.1 : 72736 ... 94029 : + |
| To GenomeBrowser | scaffold90.1:72736..94029 |
| Genes list of scaffold | scaffold90.1 |
| Synonym | pfu_aug1.0_57869.1_70869 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| choline transporter-like protein 1-like | GO:0005739 GO:0005886 GO:0006656 GO:0015220 GO:0015871 GO:0016021 GO:0070062 GO:0098655 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_90.1_00207.t3 | 1 | 1 | Choline_transpo | 1 | 278 | 0.0 | 316.0 | 0.0 | 0.0 | 315.8 |
Transcript
| Transcript ID | pfu_aug2.0_90.1_00207.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00207.t1 atgtgcggatgctgctgtggcgatgagaaggacgctgagaaggcggagctaaccaatcctataaagaacagaggatgtac agatatcatagtcctcctcttgtttgttatcttctggggtggaatgatatacatagcagcgttttccattgtaaatgggg atgcctggaggttggtatacggctatgacagctttggaaatacttgtgatgaggacaattcacacaaagccatagaaaat gtgtcgtttacaggaatgaacatgaagggcaaaccgtatgtcttcttcttggacgtaacagatcctttccattccatgca gctatgtgtcgtcaagtgccccgatatgcctctaacaaatggtggagaggtggaaaggtttgctataaggactgggtctt atctttgccgttatgatataaatcacacccagtatccgaacatcatcgataaccaaaaagataacaaagtgtgcccaaaa atgccagtcagaaacagggtagaggtaaacctagttgactttaggtcaaatgtcaaggtaacagtttacacagagctaaa aggggatgtttcactttgctttgcctga |
|
| Transcript ID | pfu_aug2.0_90.1_00207.t2 |
| Definition | - |
>pfu_aug2.0_90.1_00207.t2 atgtgcggatgctgctgtggcgatgagaaggacgctgagaaggcggagctaaccaatcctataaagaacagaggatgtac agatatcatagtcctcctcttgtttgttatcttctggggtggaatgatatacatagcagcgttttccattgtaaatgggg atgcctggaggttggtatacggctatgacagctttggaaatacttgtgatgaggacaattcacacaaagccatagaaaat gtgtcgtttacaggaatgaacatgaagggcaaaccgtatgtcttcttcttggacgtaacagatcctttccattccatgca gctatgtgtcgtcaagtgccccgatatgcctctaacaaatggtggagaggtggaaaggtttgctataaggactgggtctt atctttgccgttatgatataaatcacacccagtatccgaacatcatcgataaccaaaaagataacaaagtgtgcccaaaa atgccagtcagaaacagtacttcgctcctctatagatgtgtacccactgacttgctcgctctgcctaataaagtgttaca gaatatctttgacttccttaacgatagtgacactttccagaaagtgctcagtgatttgttgatggcctggcaagaaatgc tcatcctgtgttttgttgctttaggtaataactggaacacatgtgacagtcatcctctttggacatttatcatacttata ttcttctttgtttactgggtgatcattcttgccttcttatctacatctgagaaaagagaagtagatgccaatggatttgt gaagtacacagagcacgagacagtttcatatctgtggtggtatcacttaataggtctgatatggactagtgaattcatca tagcttgtcaacaactagtggtgtcaggggctgtagctacatggtactttactagagataagaacgctgtgcgttgtcca attggtaatgctatgaagttactgatttcccatcatttaggcagtgtagcttttggagcttttatcatcacattagtcaa attacccaggtggatcctcatgtatcttcagaagaaatttaagaattctgagaatgagtgtgccaagtactgtcttaaat gttgtatttgttgtctttggtgcctagagaaatgcctcaagtatctgaatcaaaatgcttacactgtcatagcaatatgt gggtcaaatttttgttcatctgccaagaaggcctttatgacattggttagtaacgccttgagagtagctgccatcaatag tgttggagattttatattgttcttagggaagataggcgtcatggcatcaacagctgctgtaggaatattttggctcaaga caaaaccagaattgaattattatgcagttcctgttttgttggtgtgtgtgtttgcctattttattgctcattgcttcctg tctgtctatgagatggtgatagatgccttattgttgtgtttttgtgaagatgtagatattaatgatggctcgccagatag gagatattttgccagaccctctttacagatacaaatgttacaacttgtcacagatgaatgtcatatttga |
|
| Transcript ID | pfu_aug2.0_90.1_00207.t3 |
| Definition | - |
>pfu_aug2.0_90.1_00207.t3 atgccgtgtctactactacagcctctttggacatttatcatacttatattcttctttgtttactgggtgatcattcttgc cttcttatctacatctgagaaaagagaagtagatgccaatggatttgtgaagtacacagagcacgagacagtttcatatc tgtggtggtatcacttaataggtctgatatggactagtgaattcatcatagcttgtcaacaactagtggtgtcaggggct gtagctacatggtactttactagagataagaacgctgtgcgttgtccaattggtaatgctatgaagttactgatttccca tcatttaggcagtgtagcttttggagcttttatcatcacattagtcaaattacccaggtggatcctcatgtatcttcaga agaaatttaagaattctgagaatgagtgtgccaagtactgtcttaaatgttgtatttgttgtctttggtgcctagagaaa tgcctcaagtatctgaatcaaaatgcttacactgtcatagcaatatgtgggtcaaatttttgttcatctgccaagaaggc ctttatgacattggttagtaacgccttgagagtagctgccatcaatagtgttggagattttatattgttcttagggaaga taggcgtcatggcatcaacagctgctgtaggaatattttggctcaagacaaaaccagaattgaattattatgcagttcct gttttgttggtgtgtgtgtttgcctattttattgctcattgcttcctgtctgtctatgagatggtgatagatgccttatt gttgtgtttttgtgaagatgtagatattaatgatggctcgccagataggagatattttgccagaccctctttacagatac aaatgttacaacttgtcacagatgaatgtcatatttga |
|
Protein
| Protein ID | pfu_aug2.0_90.1_00207.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00207.t1 MCGCCCGDEKDAEKAELTNPIKNRGCTDIIVLLLFVIFWGGMIYIAAFSIVNGDAWRLVYGYDSFGNTCDEDNSHKAIEN VSFTGMNMKGKPYVFFLDVTDPFHSMQLCVVKCPDMPLTNGGEVERFAIRTGSYLCRYDINHTQYPNIIDNQKDNKVCPK MPVRNRVEVNLVDFRSNVKVTVYTELKGDVSLCFA |
|
| Protein ID | pfu_aug2.0_90.1_00207.t2 |
| Definition | - |
>pfu_aug2.0_90.1_00207.t2 MCGCCCGDEKDAEKAELTNPIKNRGCTDIIVLLLFVIFWGGMIYIAAFSIVNGDAWRLVYGYDSFGNTCDEDNSHKAIEN VSFTGMNMKGKPYVFFLDVTDPFHSMQLCVVKCPDMPLTNGGEVERFAIRTGSYLCRYDINHTQYPNIIDNQKDNKVCPK MPVRNSTSLLYRCVPTDLLALPNKVLQNIFDFLNDSDTFQKVLSDLLMAWQEMLILCFVALGNNWNTCDSHPLWTFIILI FFFVYWVIILAFLSTSEKREVDANGFVKYTEHETVSYLWWYHLIGLIWTSEFIIACQQLVVSGAVATWYFTRDKNAVRCP IGNAMKLLISHHLGSVAFGAFIITLVKLPRWILMYLQKKFKNSENECAKYCLKCCICCLWCLEKCLKYLNQNAYTVIAIC GSNFCSSAKKAFMTLVSNALRVAAINSVGDFILFLGKIGVMASTAAVGIFWLKTKPELNYYAVPVLLVCVFAYFIAHCFL SVYEMVIDALLLCFCEDVDINDGSPDRRYFARPSLQIQMLQLVTDECHI |
|
| Protein ID | pfu_aug2.0_90.1_00207.t3 |
| Definition | - |
>pfu_aug2.0_90.1_00207.t3 MPCLLLQPLWTFIILIFFFVYWVIILAFLSTSEKREVDANGFVKYTEHETVSYLWWYHLIGLIWTSEFIIACQQLVVSGA VATWYFTRDKNAVRCPIGNAMKLLISHHLGSVAFGAFIITLVKLPRWILMYLQKKFKNSENECAKYCLKCCICCLWCLEK CLKYLNQNAYTVIAICGSNFCSSAKKAFMTLVSNALRVAAINSVGDFILFLGKIGVMASTAAVGIFWLKTKPELNYYAVP VLLVCVFAYFIAHCFLSVYEMVIDALLLCFCEDVDINDGSPDRRYFARPSLQIQMLQLVTDECHI |
|