Gene
| Gene Model ID | pfu_aug2.0_90.1_00212 |
|---|---|
| Locus | scaffold90.1 : 223654 ... 233675 : - |
| To GenomeBrowser | scaffold90.1:223654..233675 |
| Genes list of scaffold | scaffold90.1 |
| Synonym | pfu_aug1.0_23.1_21924 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| melanopsin isoform x1 | GO:0004871 GO:0007165 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_90.1_00212.t1 | 1 | 1 | 7tm_1 | 12 | 266 | 2.29813e-43 | 148.1 | 0.0 | 2.90069e-43 | 147.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_90.1_00212.t1 | gi|676481189|ref|XP_009062294.1| | hypothetical protein LOTGIDRAFT_154846 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_90.1_00212.t1 | gi|676489906|ref|XP_009065095.1| | hypothetical protein LOTGIDRAFT_108602, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_90.1_00212.t1 | gi|524906726|ref|XP_005108586.1| | PREDICTED: rhodopsin, GQ-coupled-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_90.1_00212.t1 | gi|697435817|ref|XP_009684278.1| | PREDICTED: melanopsin isoform X5 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_90.1_00212.t1 | gi|560990580|ref|XP_006217444.1| | PREDICTED: melanopsin isoform X1 [Vicugna pacos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_90.1_00212.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00212.t1 atgggagtgagaccaggtgccaaggaagaatttcgcagcctcagaacatcggcaaacctgtttgttcttaacctagcaat ggccgatattttcttagctctagcaaactttcctatgttagctattgccagttttgctggtaactggtcctttgggcaaa taggctgcatgatttacggcttcagtggagcactgacaggctttgtttccatcaatacgttgacggcaatcgctctggag agattcttcgtaattgcctggaaaaagaccctgccccttaacagaattccatctcgaaaaatcatatcaatatcagtatc tatctgggtttattcgtccctgtgggccatagcacctctgttcggctggggttcatatatactggagggatctttgacat cctgtaccttcgatttcttcaccagaacaacttcgaatagatcgttcgtcatgtgtattttcatattttgctttggtctt caatgttttgtgataatcttttcttacactatcatattcgttaaagtgatccgccatgaaagagatggactttaccataa tggcggaggtcacatggtctgcatccgggttagtaacaaaatcaagagcgcgaacatccaaatcaagatagcgaagatcg tgctacttatcattgtagtattttgtatgtcatggatgccatatgctatcattgctttaattggtatatatggaaatgct tcagttattacaccgctcacttcaactattccgggaatactagccaaaatgtcaactgccattaatcctatcatctacgc tctcattcatccgaaattcagaaagaagttgaaagacagattctcaaaatcaaatcgattgttcagagaagtcccatgtg agatgagatttcggggacgctctgttagacgccatccaagtttaaataatactgtgacgcacagcttgacaaaaatgtcg gacgattcaaaaccacccacagactgtatgaaaggcgatagaacaaaagaaacttctgtatag |
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Protein
| Protein ID | pfu_aug2.0_90.1_00212.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00212.t1 MGVRPGAKEEFRSLRTSANLFVLNLAMADIFLALANFPMLAIASFAGNWSFGQIGCMIYGFSGALTGFVSINTLTAIALE RFFVIAWKKTLPLNRIPSRKIISISVSIWVYSSLWAIAPLFGWGSYILEGSLTSCTFDFFTRTTSNRSFVMCIFIFCFGL QCFVIIFSYTIIFVKVIRHERDGLYHNGGGHMVCIRVSNKIKSANIQIKIAKIVLLIIVVFCMSWMPYAIIALIGIYGNA SVITPLTSTIPGILAKMSTAINPIIYALIHPKFRKKLKDRFSKSNRLFREVPCEMRFRGRSVRRHPSLNNTVTHSLTKMS DDSKPPTDCMKGDRTKETSV |
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