Gene
| Gene Model ID | pfu_aug2.0_90.1_00227 |
|---|---|
| Locus | scaffold90.1 : 533457 ... 536766 : - |
| To GenomeBrowser | scaffold90.1:533457..536766 |
| Genes list of scaffold | scaffold90.1 |
| Synonym | pfu_aug1.0_8126.1_38709 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| trmt1-like protein isoform x2 | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_90.1_00227.t1 | 2 | 1 | TRM | 3 | 38 | 1.9e-08 | 33.6 | 0.00075 | 11.0 | 4.7 |
| pfu_aug2.0_90.1_00227.t1 | 2 | 2 | TRM | 81 | 135 | 1.9e-08 | 33.6 | 1.3e-10 | 2.0e-06 | 27.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_90.1_00227.t1 | gi|602657720|ref|XP_007434574.1| | PREDICTED: TRMT1-like protein isoform X2 [Python bivittatus] | 5.0e-15 |
| pfu_aug2.0_90.1_00227.t1 | gi|551530105|ref|XP_005816511.1| | PREDICTED: TRMT1-like protein-like [Xiphophorus maculatus] | 3.0e-14 |
| pfu_aug2.0_90.1_00227.t1 | gi|617453487|ref|XP_007569435.1| | PREDICTED: TRMT1-like protein [Poecilia formosa] | 4.0e-14 |
| pfu_aug2.0_90.1_00227.t1 | gi|260797383|ref|XP_002593682.1| | hypothetical protein BRAFLDRAFT_131790 [Branchiostoma floridae] | 1.0e-13 |
| pfu_aug2.0_90.1_00227.t1 | gi|658844449|ref|XP_008404635.1| | PREDICTED: TRMT1-like protein isoform X2 [Poecilia reticulata] | 3.0e-13 |
Transcript
| Transcript ID | pfu_aug2.0_90.1_00227.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00227.t1 gtacaggaatattttcaactcttccttcatctcaaatataatatccgatcagaacgaagtaaaaatgagtgaaaaactta aaacagttcttagcacaatattggaggaatcgttatgccgtactgaagacgcatcaaaacattcctcggtgaagaatttg gaatccaatagtaatggaccaccagaaaaaaagaaaaagttcaaccaagattgttgcacatttgatgatctagttccaca attcttttacaatttacacagacggaagttcaaggaagtggaaataccaaaaagtggtaagctgattacattattgagga gtgaaggacatagagccagcaggactcactttgatcctttaggaatcagaacaagtgcttctcttaaccaactttatgac attctactgaaatgttgtaaaaagaaatcataa |
|
Protein
| Protein ID | pfu_aug2.0_90.1_00227.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_90.1_00227.t1 YRNIFNSSFISNIISDQNEVKMSEKLKTVLSTILEESLCRTEDASKHSSVKNLESNSNGPPEKKKKFNQDCCTFDDLVPQ FFYNLHRRKFKEVEIPKSGKLITLLRSEGHRASRTHFDPLGIRTSASLNQLYDILLKCCKKKS |
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